Shewanella inventionis (KX27, KCTC 42807, CGMCC 1.15339)

Name: Shewanella inventionis (KX27, KCTC 42807, CGMCC 1.15339)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133273

Type strain

Strain Designation KX27

Culture col. no. KX27 KCTC 42807 CGMCC 1.15339

NCBI tax ID(s) 1738770

Special Collections KCTC Literature strains

Links

Shewanella inventionis KX27 is an aerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from deep-sea sediment .

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 288181

KCTC 42807

@ref 20215

Last LPSN update 2025-12-16 10:01:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella inventionis

Full scientific name Shewanella inventionis Wang and Sun 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
25136	negative	1.5-3.5 µm	0.5-0.8 µm	rod-shaped	monotrichous, polar
125439	negative					99.6
125438	negative					98.5

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25136	2 mm	non-pigmented to slightly pinkish	circular	3 days	2216E agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
25136	2216E agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25136	positive	growth	4.0-37.0
25136	positive	optimum	28	mesophilic
25136		maximum	37	mesophilic
25136		minimum	4	psychrophilic
25136	negative	growth	40

Culture pH

@ref	Ability	Type	PH	PH range
25136	positive	optimum	7
25136	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25136	aerobe
125439	obligate aerobe	97.4

Spore formation

@ref	Spore formation	Confidence
125439		99.8
125438		92.864

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25136	NaCl		optimum	2 %
25136	NaCl	positive	growth	0.0-5.0 %(w/v)
25136	NaCl		growth	6 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25136	22599 ChEBI	arabinose	-	assimilation
25136	16947 ChEBI	citrate	-	assimilation
25136	27689 ChEBI	decanoate	-	assimilation
25136	5291 ChEBI	gelatin	-	hydrolysis
25136	17234 ChEBI	glucose	-	fermentation
25136	17234 ChEBI	glucose	-	assimilation
25136	24996 ChEBI	lactate	-	assimilation
25136	25115 ChEBI	malate	+	assimilation
25136	17306 ChEBI	maltose	-	assimilation
25136	29864 ChEBI	mannitol	+	assimilation
25136	506227 ChEBI	N-acetylglucosamine	-	assimilation
25136	17632 ChEBI	nitrate	+	reduction
25136	32032 ChEBI	potassium gluconate	-	assimilation
25136	28017 ChEBI	starch	-	hydrolysis
25136	27897 ChEBI	tryptophan	-	energy source
25136	53424 ChEBI	tween 20	+	hydrolysis
25136	53423 ChEBI	tween 40	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
25136	2637	amikacin
25136	28971	ampicillin
25136	3393	carbenicillin
25136	124991	cefalotin
25136	3493	cefoperazone
25136	3508	ceftazidime
25136	29007	ceftriaxone
25136	3515	cefuroxime
25136	3547	cephradine
25136	17698	chloramphenicol
25136	100241	ciprofloxacin
25136	3745	clindamycin
25136	50845	doxycycline
25136	48923	erythromycin
25136	5195	furazolidone
25136	17833	gentamicin
25136	6104	kanamycin
25136	31845	midecamycin
25136	50694	minocycline
25136	7507	neomycin
25136	100246	norfloxacin
25136	7731	ofloxacin
25136	7809	oxacillin
25136	18208	penicillin g
25136	8232	piperacillin
25136	8309	polymyxin b
25136	9332	sulfamethoxazole
25136	27902	tetracycline
25136	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25136	16136 ChEBI	hydrogen sulfide
25136	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25136	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
25136	acid phosphatase	+	3.1.3.2
25136	alkaline phosphatase	+	3.1.3.1
25136	alpha-chymotrypsin	+	3.4.21.1
25136	alpha-fucosidase	-	3.2.1.51
25136	alpha-galactosidase	+	3.2.1.22
25136	alpha-glucosidase	+	3.2.1.20
25136	alpha-mannosidase	-	3.2.1.24
25136	arginine dihydrolase	-	3.5.3.6
25136	beta-galactosidase	-	3.2.1.23
25136	beta-glucosidase	-	3.2.1.21
25136	beta-glucuronidase	-	3.2.1.31
25136	catalase	+	1.11.1.6
25136	cystine arylamidase	-	3.4.11.3
25136	cytochrome oxidase	+	1.9.3.1
25136	esterase (C 4)	-
25136	esterase Lipase (C 8)	+
25136	leucine arylamidase	+	3.4.11.1
25136	lipase (C 14)	-
25136	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25136	naphthol-AS-BI-phosphohydrolase	+
25136	trypsin	-	3.4.21.4
25136	tryptophan deaminase	-	4.1.99.1
25136	urease	-	3.5.1.5
25136	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
25136	deep-sea sediment (depth of 1011 m)	Iheya Ridge in the Okinawa Trough	27	126.888 27/126.888	marine 2216 agar	5 days	28	streak-plate method

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464185v1 assembly for Shewanella inventionis CGMCC 1.15339	scaffold	GCA_014641855	1738770.3	2996178940	1738770	48.33
66792	ASM2328359v1 assembly for Shewanella inventionis KCTC 42807	contig	GCA_023283595	1738770.11	8113403501	1738770	42.24

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25136	Shewanella inventionis strain KX27 16S ribosomal RNA gene, partial sequence	KT781407	1504		1738770

GC content

@ref	GC-content (mol%)	Method
25136	43	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella inventionis CGMCC 1.15339
NCBI: GCA_014641855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	82.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella inventionis CGMCC 1.15339
NCBI: GCA_014641855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	94.68	yes
125438	aerobic	aerobicⓘ	yes	63.69	yes
125438	spore-forming	spore-formingⓘ	no	92.86	no
125438	thermophilic	thermophileⓘ	no	99.45	no
125438	flagellated	motile2+ⓘ	yes	88.28	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella inventionis sp. nov., isolated from deep-sea sediment.	Wang MQ, Sun L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001450	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25136	M. Q. S. Wang, L.: Shewanella inventionis sp. nov., isolated from deep-sea sediment. IJSEM 66: 4947 - 4953 2016 ( DOI 10.1099/ijsem.0.001450 , PubMed 27562367 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella inventionis (KX27, KCTC 42807, CGMCC 1.15339)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014641855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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