Strain identifier

BacDive ID: 133243

Type strain: Yes

Species: Glycomyces lacisalsi

Strain history: T.-W. Guan; Sch. of Bioeng., Xihua Univ., China; XHU 5089.

NCBI tax ID(s): 1737868 (species)

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General

@ref: 25076

BacDive-ID: 133243

keywords: 16S sequence, Bacteria, aerobe, halotolerant, Gram-positive, filament-shaped

description: Glycomyces lacisalsi XHU 5089 is an aerobe, halotolerant, Gram-positive bacterium that was isolated from hypersaline soil.

NCBI tax id

  • NCBI tax id: 1737868
  • Matching level: species

strain history

  • @ref: 67770
  • history: T.-W. Guan; Sch. of Bioeng., Xihua Univ., China; XHU 5089.

doi: 10.13145/bacdive133243.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Glycomycetales
  • family: Glycomycetaceae
  • genus: Glycomyces
  • species: Glycomyces lacisalsi
  • full scientific name: Glycomyces lacisalsi Guan et al. 2016

@ref: 25076

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Glycomycetales

family: Glycomycetaceae

genus: Glycomyces

species: Glycomyces lacisalsi

type strain: yes

Morphology

cell morphology

  • @ref: 25076
  • gram stain: positive
  • cell shape: filament-shaped
  • motility: no

Culture and growth conditions

culture medium

  • @ref: 25076
  • name: modified ISP 4 medium
  • growth: yes
  • composition: ISP 4 + NaCl (2.0 % w/v)

culture temp

@refgrowthtypetemperaturerange
25076positivegrowth20.0-50.0
25076positiveoptimum30.0-35.0mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
25076positivegrowth6.0-12.0alkaliphile
25076positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 25076
  • oxygen tolerance: aerobe

halophily

@refhalophily levelsaltgrowthtested relationconcentration
25076halotolerantNaClpositivegrowth0.0-9.0 %(w/v)
25076NaCloptimum1.0-3.0 %(w/v)

murein

  • @ref: 25076
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

observation

  • @ref: 67770
  • observation: quinones: MK-10(H4), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2507622599arabinose-carbon source
2507617113erythritol-carbon source
2507616813galactitol-carbon source
2507628260galactose-carbon source
2507617268myo-inositol-carbon source
2507617306maltose-carbon source
2507637684mannose-carbon source
2507617632nitrate-reduction
2507616634raffinose-carbon source
2507633942ribose-carbon source
2507628017starch-hydrolysis
2507627897tryptophan-energy source
2507616199urea-hydrolysis
2507618222xylose-carbon source
2507662968cellulose+hydrolysis
2507628757fructose+carbon source
250765291gelatin+hydrolysis
2507617234glucose+fermentation
2507629864mannitol+carbon source
2507626546rhamnose+carbon source
2507630911sorbitol+carbon source
2507627922sorbose+carbon source
2507628017starch+carbon source
2507617992sucrose+carbon source
2507653424tween 20+hydrolysis
2507653423tween 40+hydrolysis
2507653425tween 60+hydrolysis
2507653426tween 80+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
2507617698chloramphenicolyesyes
2507648923erythromycinyesyes
250763745clindamycinyesno
2507628971ampicillinyesno
2507628077rifampicinyesno
2507628001vancomycinyesno
2507617833gentamicinyesno
2507627902tetracyclineyesno
2507617076streptomycinyesno
250762637amikacinyesno
250766104kanamycinyesno
2507617334penicillinyesno
250767507neomycinyesno
2507628864tobramycinyesno
25076100241ciprofloxacinyesno
25076100147nalidixic acidyesno
250768309polymyxin byesno

metabolite production

@refChebi-IDmetaboliteproduction
2507615688acetoinno
2507616136hydrogen sulfideno
2507635581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testindole test
2507617234glucose+
2507615688acetoin-
2507635581indole-

enzymes

@refvalueactivityec
25076catalase+1.11.1.6
25076cytochrome oxidase-1.9.3.1
25076tryptophan deaminase-4.1.99.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture composition
25076hypersaline soilXinjiangChinaCHNAsiaSSC mediumcontaining (per litre): starch,1.0 g; sucrose, 5.0 g; casein hydrolysate acid, 0.1 g; KNO3 ,0.5 g; CaCO3 , 0.1 g; K2HPO4 , 1.0 g; MgCl2 , 0.5 g; NaCl,100 g; agar, 18.0 g (pH 7.0–7.5)
67770Hypersaline habitatChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_182911.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_344;96_23452;97_29328;98_119137;99_182911&stattab=map
  • Last taxonomy: Glycomyces lacisalsi subclade
  • 16S sequence: KT895607
  • Sequence Identity:
  • Total samples: 7
  • soil counts: 6
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 25076
  • description: Glycomyces sp. XHU 5089 16S ribosomal RNA gene, partial sequence
  • accession: KT895607
  • length: 1420
  • database: nuccore
  • NCBI tax ID: 1737868

GC content

  • @ref: 25076
  • GC-content: 68.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25076

culture collection no.: XHU 5089, CCTCC AA 2015034, KCTC 39688, JCM 31432

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27670917Glycomyces lacisalsi sp. nov., an actinomycete isolated from a hypersaline habitat.Guan TW, Wang PH, Tian L, Tang SK, Xiang HPInt J Syst Evol Microbiol10.1099/ijsem.0.0015222016Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Ecosystem, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/chemistryTranscriptome
Phylogeny29485399Glycomyces anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis aphylla L.Zhang YG, Wang HF, Alkhalifah DHM, Xiao M, Zhou XK, Liu YH, Hozzein WN, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0026682018Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Chenopodiaceae/*microbiology, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome
Phylogeny34373934Glycomyces salinus sp. nov., an actinomycete isolated from a hypersaline habitat.Li R, Jiang GQ, Wang Y, Chen YG, Zhou EM, Tang SKArch Microbiol10.1007/s00203-021-02510-42021*Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Ecosystem, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25076T. W. W. Guan, P. H.,Tian, L.,Tang, S. K.,Xiang, H. P.Glycomyces lacisalsi sp. nov., an actinomycete isolated from a hypersaline habitat10.1099/ijsem.0.001522IJSEM 66: 5366-5370 201627670917
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/