Name: Glycomyces lacisalsi XHU 5089
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133243

Type strain:

Species: Glycomyces lacisalsi

Culture col. no.: XHU 5089, CCTCC AA 2015034, KCTC 39688, JCM 31432

Strain history: T.-W. Guan; Sch. of Bioeng., Xihua Univ., China; XHU 5089.

NCBI tax ID(s): 1737868 (species)

Special Collections

Section

Glycomyces lacisalsi XHU 5089 is an aerobe, halotolerant, Gram-positive bacterium that was isolated from hypersaline soil.

filament-shaped
Gram-positive
aerobe
halotolerant
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces lacisalsi**
	Full Scientific Name (LPSN)	Glycomyces lacisalsi Guan et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25076]	Gram stain	positive

[Ref.: #25076]	Cell shape	filament-shaped

[Ref.: #25076]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25076]

Culture medium

modified ISP 4 medium

[Ref.: #25076]

Culture medium growth

[Ref.: #25076]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #25076]	growth	20.0-50.0 °C
[Ref.: #25076]	optimum	30.0-35.0 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #25076]			optimum	7.0-8.0
[Ref.: #25076]			growth	6.0-12.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25076]

Oxygen tolerance

aerobe

[Ref.: #25076]

Halophily / tolerance level

halotolerant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25076]		NaCl		growth	0.0-9.0	%(w/v)
[Ref.: #25076]		NaCl		optimum	1.0-3.0	%(w/v)

[Ref.: #25076]	Murein short key	A31
[Ref.: #25076]	Murein types	A1gamma m-Dpm-direct

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25076]	arabinose ChEBI	-	carbon source
[Ref.: #25076]	cellulose ChEBI	+	hydrolysis
[Ref.: #25076]	erythritol ChEBI	-	carbon source
[Ref.: #25076]	fructose ChEBI	+	carbon source
[Ref.: #25076]	galactitol ChEBI	-	carbon source
[Ref.: #25076]	galactose ChEBI	-	carbon source
[Ref.: #25076]	gelatin ChEBI	+	hydrolysis
[Ref.: #25076]	glucose ChEBI	+	fermentation
[Ref.: #25076]	maltose ChEBI	-	carbon source
[Ref.: #25076]	mannitol ChEBI	+	carbon source
[Ref.: #25076]	mannose ChEBI	-	carbon source
[Ref.: #25076]	myo-inositol ChEBI	-	carbon source
[Ref.: #25076]	nitrate ChEBI	-	reduction
[Ref.: #25076]	raffinose ChEBI	-	carbon source
[Ref.: #25076]	rhamnose ChEBI	+	carbon source
[Ref.: #25076]	ribose ChEBI	-	carbon source
[Ref.: #25076]	sorbitol ChEBI	+	carbon source
[Ref.: #25076]	sorbose ChEBI	+	carbon source
[Ref.: #25076]	starch ChEBI	-	hydrolysis
[Ref.: #25076]	starch ChEBI	+	carbon source
[Ref.: #25076]	sucrose ChEBI	+	carbon source
[Ref.: #25076]	tryptophan ChEBI	-	energy source
[Ref.: #25076]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25076]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25076]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25076]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25076]	urea ChEBI	-	hydrolysis
[Ref.: #25076]	xylose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #25076]	amikacin ChEBI	no
[Ref.: #25076]	ampicillin ChEBI	no
[Ref.: #25076]	chloramphenicol ChEBI	yes
[Ref.: #25076]	ciprofloxacin ChEBI	no
[Ref.: #25076]	clindamycin ChEBI	no
[Ref.: #25076]	erythromycin ChEBI	yes
[Ref.: #25076]	gentamicin ChEBI	no
[Ref.: #25076]	kanamycin ChEBI	no
[Ref.: #25076]	nalidixic acid ChEBI	no
[Ref.: #25076]	neomycin ChEBI	no
[Ref.: #25076]	penicillin ChEBI	no
[Ref.: #25076]	polymyxin b ChEBI	no
[Ref.: #25076]	rifampicin ChEBI	no
[Ref.: #25076]	streptomycin ChEBI	no
[Ref.: #25076]	tetracycline ChEBI	no
[Ref.: #25076]	tobramycin ChEBI	no
[Ref.: #25076]	vancomycin ChEBI	no
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #25076]	acetoin ChEBI	no
[Ref.: #25076]	hydrogen sulfide ChEBI	no
[Ref.: #25076]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #25076]	acetoin ChEBI	-
[Ref.: #25076]	glucose ChEBI		+
[Ref.: #25076]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #25076]	catalase	+	1.11.1.6
[Ref.: #25076]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25076]	tryptophan deaminase	-	4.1.99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25076]	Sample type/isolated from	hypersaline soil
[Ref.: #25076]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #25076]	Country	China
[Ref.: #25076]	Country ISO 3 Code	CHN
[Ref.: #25076]	Continent	Asia
[Ref.: #25076]	Enrichment culture	SSC medium
[Ref.: #25076]	Enrichment culture composition	containing (per litre): starch,1.0 g; sucrose, 5.0 g; casein hydrolysate acid, 0.1 g; KNO3 ,0.5 g; CaCO3 , 0.1 g; K2HPO4 , 1.0 g; MgCl2 , 0.5 g; NaCl,100 g; agar, 18.0 g (pH 7.0–7.5)

[Ref.: #67770]	Sample type/isolated from	Hypersaline habitat
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT895607 (>99% sequence identity) for Glycomyces lacisalsi subclade from Microbeatlas

Aquatic Samples
Soil Samples	6
Animal Samples	1
Plant Samples
Total Samples	7

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25076]	Glycomyces lacisalsi strain XHU 5089 16S ribosomal RNA gene, partial sequence	KT895607	1420	GenBank ENA	1737868 tax ID

[Ref.: #25076]

GC-content

68.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25076]

Culture collection no.

XHU 5089, CCTCC AA 2015034, KCTC 39688, JCM 31432

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces salinus sp. nov., an actinomycete isolated from a hypersaline habitat.	Li R, Jiang GQ, Wang Y, Chen YG, Zhou EM, Tang SK	Arch Microbiol	10.1007/s00203-021-02510-4	2021	*
Phylogeny	Glycomyces anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis aphylla L.	Zhang YG, Wang HF, Alkhalifah DHM, Xiao M, Zhou XK, Liu YH, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002668	2018	*
Phylogeny	Glycomyces lacisalsi sp. nov., an actinomycete isolated from a hypersaline habitat.	Guan TW, Wang PH, Tian L, Tang SK, Xiang HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001522	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25076

T. W. W. Guan, P. H.,Tian, L.,Tang, S. K.,Xiang, H. P.: Glycomyces lacisalsi sp. nov., an actinomycete isolated from a hypersaline habitat. IJSEM 66: 5366 - 5370 2016 ( DOI 10.1099/ijsem.0.001522 , PubMed 27670917 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Glycomyces lacisalsi in external resources:
SILVA
BRENDA
PANGAEA
GBIF