Name: Glycomyces lacisalsi XHU 5089
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133243

Type strain:

Species: Glycomyces lacisalsi

Culture col. no.: XHU 5089, CCTCC AA 2015034, KCTC 39688, JCM 31432

Strain history: T.-W. Guan; Sch. of Bioeng., Xihua Univ., China; XHU 5089.

NCBI tax ID(s): 1737868 (species)

Section

Glycomyces lacisalsi XHU 5089 is an aerobe, halotolerant, Gram-positive bacterium that was isolated from hypersaline soil.

filament-shaped
Gram-positive
aerobe
halotolerant
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces lacisalsi**
	Full Scientific Name (LPSN)	Glycomyces lacisalsi Guan et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25076]	Gram stain	positive
[Ref.: #25076]	Cell shape	filament-shaped
[Ref.: #25076]	Motility	no

Information on culture and growth conditions Culture and growth conditions

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Culture medium

modified ISP 4 medium

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #25076]	growth	20.0-50.0 °C
[Ref.: #25076]	optimum	30.0-35.0 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #25076]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25076]			optimum	7.0-8.0
[Ref.: #25076]			growth	6.0-12.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25076]

Oxygen tolerance

aerobe

[Ref.: #25076]

Halophily / tolerance level

halotolerant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25076]		NaCl		growth	0.0-9.0	%(w/v)
[Ref.: #25076]		NaCl		optimum	1.0-3.0	%(w/v)

[Ref.: #25076]	Murein short key	A31
[Ref.: #25076]	Murein types	A1gamma m-Dpm-direct

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25076]	arabinose ChEBI	-	carbon source
[Ref.: #25076]	cellulose ChEBI	+	hydrolysis
[Ref.: #25076]	erythritol ChEBI	-	carbon source
[Ref.: #25076]	fructose ChEBI	+	carbon source
[Ref.: #25076]	galactitol ChEBI	-	carbon source
[Ref.: #25076]	galactose ChEBI	-	carbon source
[Ref.: #25076]	gelatin ChEBI	+	hydrolysis
[Ref.: #25076]	glucose ChEBI	+	fermentation
[Ref.: #25076]	maltose ChEBI	-	carbon source
[Ref.: #25076]	mannitol ChEBI	+	carbon source
[Ref.: #25076]	mannose ChEBI	-	carbon source
[Ref.: #25076]	myo-inositol ChEBI	-	carbon source
[Ref.: #25076]	nitrate ChEBI	-	reduction
[Ref.: #25076]	raffinose ChEBI	-	carbon source
[Ref.: #25076]	rhamnose ChEBI	+	carbon source
[Ref.: #25076]	ribose ChEBI	-	carbon source
[Ref.: #25076]	sorbitol ChEBI	+	carbon source
[Ref.: #25076]	sorbose ChEBI	+	carbon source
[Ref.: #25076]	starch ChEBI	-	hydrolysis
[Ref.: #25076]	starch ChEBI	+	carbon source
[Ref.: #25076]	sucrose ChEBI	+	carbon source
[Ref.: #25076]	tryptophan ChEBI	-	energy source
[Ref.: #25076]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25076]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25076]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25076]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25076]	urea ChEBI	-	hydrolysis
[Ref.: #25076]	xylose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #25076]	amikacin ChEBI	no
[Ref.: #25076]	ampicillin ChEBI	no
[Ref.: #25076]	chloramphenicol ChEBI	yes
[Ref.: #25076]	ciprofloxacin ChEBI	no
[Ref.: #25076]	clindamycin ChEBI	no
[Ref.: #25076]	erythromycin ChEBI	yes
[Ref.: #25076]	gentamicin ChEBI	no
[Ref.: #25076]	kanamycin ChEBI	no
[Ref.: #25076]	nalidixic acid ChEBI	no
[Ref.: #25076]	neomycin ChEBI	no
[Ref.: #25076]	penicillin ChEBI	no
[Ref.: #25076]	polymyxin b ChEBI	no
[Ref.: #25076]	rifampicin ChEBI	no
[Ref.: #25076]	streptomycin ChEBI	no
[Ref.: #25076]	tetracycline ChEBI	no
[Ref.: #25076]	tobramycin ChEBI	no
[Ref.: #25076]	vancomycin ChEBI	no
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #25076]	acetoin ChEBI	no
[Ref.: #25076]	hydrogen sulfide ChEBI	no
[Ref.: #25076]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #25076]	acetoin ChEBI	-
[Ref.: #25076]	glucose ChEBI		+
[Ref.: #25076]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #25076]	catalase	+	1.11.1.6
[Ref.: #25076]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25076]	tryptophan deaminase	-	4.1.99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25076]	Sample type/isolated from	hypersaline soil
[Ref.: #25076]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #25076]	Country	China
[Ref.: #25076]	Country ISO 3 Code	CHN
[Ref.: #25076]	Continent	Asia
[Ref.: #25076]	Enrichment culture	SSC medium
[Ref.: #25076]	Enrichment culture composition	containing (per litre): starch,1.0 g; sucrose, 5.0 g; casein hydrolysate acid, 0.1 g; KNO3 ,0.5 g; CaCO3 , 0.1 g; K2HPO4 , 1.0 g; MgCl2 , 0.5 g; NaCl,100 g; agar, 18.0 g (pH 7.0–7.5)

[Ref.: #67770]	Sample type/isolated from	Hypersaline habitat
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT895607 (>99% sequence identity) for Glycomyces lacisalsi subclade from Microbeatlas

Aquatic Samples
Soil Samples	6
Animal Samples	1
Plant Samples
Total Samples	7

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25076]	Glycomyces sp. XHU 5089 16S ribosomal RNA gene, partial sequence	KT895607	1420	GenBank	1737868 tax ID

[Ref.: #25076]

GC-content

68.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25076]

Culture collection no.

XHU 5089, CCTCC AA 2015034, KCTC 39688, JCM 31432

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces salinus sp. nov., an actinomycete isolated from a hypersaline habitat.	Li R, Jiang GQ, Wang Y, Chen YG, Zhou EM, Tang SK	Arch Microbiol	10.1007/s00203-021-02510-4	2021	*
Phylogeny	Glycomyces anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis aphylla L.	Zhang YG, Wang HF, Alkhalifah DHM, Xiao M, Zhou XK, Liu YH, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002668	2018	*
Phylogeny	Glycomyces lacisalsi sp. nov., an actinomycete isolated from a hypersaline habitat.	Guan TW, Wang PH, Tian L, Tang SK, Xiang HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001522	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25076

T. W. W. Guan, P. H.,Tian, L.,Tang, S. K.,Xiang, H. P.: Glycomyces lacisalsi sp. nov., an actinomycete isolated from a hypersaline habitat. IJSEM 66: 5366 - 5370 2016 ( DOI 10.1099/ijsem.0.001522 , PubMed 27670917 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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