Strain identifier

BacDive ID: 133175

Type strain: Yes

Species: Acinetobacter lactucae

Strain Designation: JVAP01

NCBI tax ID(s): 1785128 (species)

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General

@ref: 24951

BacDive-ID: 133175

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, coccus-shaped, colony-forming

description: Acinetobacter lactucae JVAP01 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from urine sample of a human patient.

NCBI tax id

  • NCBI tax id: 1785128
  • Matching level: species

doi: 10.13145/bacdive133175.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter lactucae
  • full scientific name: Acinetobacter lactucae Rooney et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Acinetobacter dijkshoorniae

@ref: 24951

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter dijkshoorniae

strain designation: JVAP01

type strain: yes

Morphology

cell morphology

  • @ref: 24951
  • gram stain: negative
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 24951
  • colony size: 1.0-2.0 mm
  • colony shape: circular
  • incubation period: 1 day
  • medium used: TSA

Culture and growth conditions

culture medium

  • @ref: 24951
  • name: Trypticase Soy Agar (TSA)
  • growth: yes

culture temp

  • @ref: 24951
  • growth: positive
  • type: growth
  • temperature: 25-44

Physiology and metabolism

oxygen tolerance

  • @ref: 24951
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2495130719citraconate-carbon source
2495130719citraconate-growth
2495117634D-glucose-carbon source
2495117634D-glucose-growth
2495116236ethanol-growth
249515291gelatin-hydrolysis
2495124265gluconate-carbon source
2495124265gluconate-growth
2495118295histamine-carbon source
2495130924L-tartrate-growth
24951391504-oxopentanoate-growth
24951620642,3-butanediol+carbon source
2495116865gamma-aminobutyric acid+carbon source
24951178794-hydroxybenzoate+carbon source
2495130089acetate+carbon source
2495117128adipate+carbon source
2495178208azelaate+carbon source
2495116150benzoate+carbon source
2495116958beta-alanine+carbon source
2495116947citrate+carbon source
2495117634D-glucose+builds acid from
2495115588D-malate+carbon source
2495116988D-ribose+carbon source
2495158044gentisate+carbon source
2495117859glutaric acid+carbon source
2495130849L-arabinose+carbon source
2495116467L-arginine+carbon source
2495129991L-aspartate+carbon source
2495129985L-glutamate+carbon source
2495115971L-histidine+carbon source
2495115603L-leucine+carbon source
2495115729L-ornithine+carbon source
2495117295L-phenylalanine+carbon source
2495117895L-tyrosine+carbon source
2495124996lactate+carbon source
2495115792malonate+carbon source
2495118401phenylacetate+carbon source
2495117148putrescine+carbon source
2495115708trans-aconitate+carbon source
2495162517tricarballylate+carbon source
2495118123trigonelline+carbon source
2495116765tryptamine+growth
2495116988D-ribose+/-growth
2495116236ethanol+/-growth
2495115729L-ornithine+/-growth
2495130924L-tartrate+/-growth
24951391504-oxopentanoate+/-growth
2495118401phenylacetate+/-growth
2495118123trigonelline+/-growth
2495116765tryptamine+/-growth

enzymes

@refvalueactivityec
24951catalase+1.11.1.6
24951cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 24951
  • sample type: urine sample of a human patient
  • country: Turkey
  • origin.country: TUR
  • isolation date: 2009-08

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human
#Host Body Product#Fluids#Urine

Sequence information

16S sequences

  • @ref: 24951
  • description: 16S rRNA
  • accession: KJ600793
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter lactucae JVAP01GCA_001595745scaffoldncbi1785128
66792Acinetobacter lactucae JVAP012690315737draftimg1785128

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.566no
flagellatedno93.566no
gram-positiveno97.255yes
gram-positiveno97.255yes
anaerobicno98.575yes
anaerobicno98.575yes
aerobicyes94.336no
halophileno87.274no
halophileno87.274no
spore-formingno96.563no
spore-formingno96.563no
glucose-utilno70.586yes
glucose-utilno70.586yes
motileno89.187yes
motileno89.187yes
aerobicyes94.336no
thermophileno99.913no
thermophileno99.913no
glucose-fermentno83.171no
glucose-fermentno83.171no

External links

@ref: 24951

culture collection no.: CECT 9134, LMG 29605

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27432448Acinetobacter dijkshoorniae sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex mainly recovered from clinical samples in different countries.Cosgaya C, Mari-Almirall M, Van Assche A, Fernandez-Orth D, Mosqueda N, Telli M, Huys G, Higgins PG, Seifert H, Lievens B, Roca I, Vila JInt J Syst Evol Microbiol10.1099/ijsem.0.0013182016Acinetobacter/*classification/genetics/isolation & purification, Acinetobacter Infections/microbiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Multilocus Sequence Typing, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationPathogenicity
Genetics28082506Draft Genome Sequence of JVAP01T, the Type Strain of the Novel Species Acinetobacter dijkshoorniae.Fernandez-Orth D, Cosgaya C, Telli M, Mosqueda N, Mari-Almirall M, Roca I, Vila JGenome Announc10.1128/genomeA.01480-162017

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24951C. M.-A. Cosgaya, Marta,Van Assche, Ado,Fernández-Orth, Dietmar,Mosqueda, Noraida,Telli, Murat,Huys, Geert,Higgins, Paul G.,Seifert, Harald,Lievens, Bart,Roca, Ignasi,Vila, JordiAcinetobacter dijkshoorniae sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex mainly recovered from clinical samples in different countries10.1099/ijsem.0.001318IJSEM 66: 4105-4111 201627432448
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes