Acinetobacter lactucae (JVAP01, CECT 9134, LMG 29605)

Name: Acinetobacter lactucae (JVAP01, CECT 9134, LMG 29605)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133175

Type strain

Strain Designation JVAP01

Culture col. no. JVAP01 CECT 9134 LMG 29605

NCBI tax ID(s) 1785128

Special Collections Literature strains

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Acinetobacter lactucae JVAP01 is an aerobe, Gram-negative, coccus-shaped prokaryote that forms circular colonies and was isolated from urine sample of a human patient.

Gram-negative coccus-shaped colony-forming aerobe genome sequence

Name and taxonomic classification

SI-ID 409551

LMG 29605,CECT 9134,CCUG 69625

@ref 20215

Last LPSN update 2025-12-16 10:01:42

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Acinetobacter

Species Acinetobacter lactucae

Full scientific name Acinetobacter lactucae Rooney et al. 2016

Synonyms (1)

Acinetobacter dijkshoorniae

BacDive ID	Other strains from **Acinetobacter lactucae** (3)	Type strain
140631	A. lactucae CCUG 68785, NRRL B-41902 (type strain)
169658	A. lactucae ST5, DSM 26954
175367	A. lactucae 114635, DSM 114635

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
24951	negative	coccus-shaped
125439	negative		98.3
125438	negative		97.5

Colony morphology

@ref	Colony size	Colony shape	Incubation period	Medium used
24951	1.0-2.0 mm	circular	1 day	TSA

Culture and growth conditions

Culture medium

@ref	Name	Growth
24951	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
24951	positive	growth	25-44

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
24951	aerobe
125438	aerobe	90.619
125439	obligate aerobe	98.5

Spore formation

@ref	Spore formation	Confidence
125439		98.2
125438		93.572

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24951	62064 ChEBI	2,3-butanediol	+	carbon source
24951	17879 ChEBI	4-hydroxybenzoate	+	carbon source
24951	39150 ChEBI	4-oxopentanoate	-	growth
24951	39150 ChEBI	4-oxopentanoate	+/-	growth
24951	30089 ChEBI	acetate	+	carbon source
24951	17128 ChEBI	adipate	+	carbon source
24951	78208 ChEBI	azelaate	+	carbon source
24951	16150 ChEBI	benzoate	+	carbon source
24951	16958 ChEBI	beta-alanine	+	carbon source
24951	30719 ChEBI	citraconate	-	carbon source
24951	30719 ChEBI	citraconate	-	growth
24951	16947 ChEBI	citrate	+	carbon source
24951	17634 ChEBI	D-glucose	-	carbon source
24951	17634 ChEBI	D-glucose	-	growth
24951	17634 ChEBI	D-glucose	+	builds acid from
24951	15588 ChEBI	D-malate	+	carbon source
24951	16988 ChEBI	D-ribose	+	carbon source
24951	16988 ChEBI	D-ribose	+/-	growth
24951	16236 ChEBI	ethanol	-	growth
24951	16236 ChEBI	ethanol	+/-	growth
24951	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
24951	5291 ChEBI	gelatin	-	hydrolysis
24951	58044 ChEBI	gentisate	+	carbon source
24951	24265 ChEBI	gluconate	-	carbon source
24951	24265 ChEBI	gluconate	-	growth
24951	17859 ChEBI	glutaric acid	+	carbon source
24951	18295 ChEBI	histamine	-	carbon source
24951	30849 ChEBI	L-arabinose	+	carbon source
24951	16467 ChEBI	L-arginine	+	carbon source
24951	29991 ChEBI	L-aspartate	+	carbon source
24951	29985 ChEBI	L-glutamate	+	carbon source
24951	15971 ChEBI	L-histidine	+	carbon source
24951	15603 ChEBI	L-leucine	+	carbon source
24951	15729 ChEBI	L-ornithine	+	carbon source
24951	15729 ChEBI	L-ornithine	+/-	growth
24951	17295 ChEBI	L-phenylalanine	+	carbon source
24951	30924 ChEBI	L-tartrate	-	growth
24951	30924 ChEBI	L-tartrate	+/-	growth
24951	17895 ChEBI	L-tyrosine	+	carbon source
24951	24996 ChEBI	lactate	+	carbon source
24951	15792 ChEBI	malonate	+	carbon source
24951	18401 ChEBI	phenylacetate	+	carbon source
24951	18401 ChEBI	phenylacetate	+/-	growth
24951	17148 ChEBI	putrescine	+	carbon source
24951	15708 ChEBI	trans-aconitate	+	carbon source
24951	62517 ChEBI	tricarballylate	+	carbon source
24951	18123 ChEBI	trigonelline	+	carbon source
24951	18123 ChEBI	trigonelline	+/-	growth
24951	16765 ChEBI	tryptamine	+	growth
24951	16765 ChEBI	tryptamine	+/-	growth

Enzymes

@ref	Value	Activity	Ec
24951	catalase	+	1.11.1.6
24951	cytochrome oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Fluids	#Urine

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Isolation date
24951	urine sample of a human patient	Turkey	TUR	2009-08

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM159574v2 assembly for Acinetobacter lactucae JVAP01	scaffold	GCA_001595745	2690315737	1785128	59.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acinetobacter lactucae JVAP01
NCBI: GCA_001595745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	59.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter lactucae JVAP01
NCBI: GCA_001595745.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	yes
125438	anaerobic	anaerobicⓘ	no	98.34	no
125438	aerobic	aerobicⓘ	yes	90.62	yes
125438	spore-forming	spore-formingⓘ	no	93.57	no
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	no	77.27	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of JVAP01T, the Type Strain of the Novel Species Acinetobacter dijkshoorniae.	Fernandez-Orth D, Cosgaya C, Telli M, Mosqueda N, Mari-Almirall M, Roca I, Vila J	Genome Announc	10.1128/genomeA.01480-16	2017
Phylogeny	Acinetobacter dijkshoorniae sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex mainly recovered from clinical samples in different countries.	Cosgaya C, Mari-Almirall M, Van Assche A, Fernandez-Orth D, Mosqueda N, Telli M, Huys G, Higgins PG, Seifert H, Lievens B, Roca I, Vila J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001318	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24951	C. M.-A. Cosgaya, Marta,Van Assche, Ado,Fernández-Orth, Dietmar,Mosqueda, Noraida,Telli, Murat,Huys, Geert,Higgins, Paul G.,Seifert, Harald,Lievens, Bart,Roca, Ignasi,Vila, Jordi: Acinetobacter dijkshoorniae sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex mainly recovered from clinical samples in different countries. IJSEM 66: 4105 - 4111 2016 ( DOI 10.1099/ijsem.0.001318 , PubMed 27432448 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acinetobacter lactucae (JVAP01, CECT 9134, LMG 29605)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001595745

Genome-based predictions

Predictions

Literature

Literature

References

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