Strain identifier

BacDive ID: 133170

Type strain: Yes

Species: Lysobacter erysipheiresistens

Strain Designation: RS-LYSO-3

Strain history: X. Bing; Yunnan Reascend Tob. Technol. Group Co., Ltd., China; RS-LYSO-3.

NCBI tax ID(s): 1749332 (species)

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General

@ref: 24945

BacDive-ID: 133170

keywords: 16S sequence, Bacteria, Gram-negative, rod-shaped, colony-forming

description: Lysobacter erysipheiresistens RS-LYSO-3 is a Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from tobacco-cultivated soil.

NCBI tax id

  • NCBI tax id: 1749332
  • Matching level: species

strain history

  • @ref: 67770
  • history: X. Bing; Yunnan Reascend Tob. Technol. Group Co., Ltd., China; RS-LYSO-3.

doi: 10.13145/bacdive133170.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Lysobacter
  • species: Lysobacter erysipheiresistens
  • full scientific name: Lysobacter erysipheiresistens Xie et al. 2016

@ref: 24945

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Lysobacter

species: Lysobacter erysipheiresistens

strain designation: RS-LYSO-3

type strain: yes

Morphology

cell morphology

  • @ref: 24945
  • gram stain: negative
  • cell length: 1.0-2.0 µm
  • cell width: 0.2-0.5 µm
  • cell shape: rod-shaped

colony morphology

  • @ref: 24945
  • colony size: <0.5 mm
  • colony color: pale yellow
  • colony shape: circular
  • incubation period: 4 days
  • medium used: 2216E medium

Culture and growth conditions

culture medium

@refnamegrowthcomposition
249452216E mediumyes
24945LB medium (lysogeny broth)yescontaining tobacco root exudates

culture temp

@refgrowthtypetemperaturerange
24945positivegrowth10.0-35.0
67770positivegrowth30mesophilic

culture pH

  • @ref: 24945
  • ability: positive
  • type: growth
  • pH: 6.0-8.0

Physiology and metabolism

halophily

  • @ref: 24945
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0.0-5.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
24945168082-dehydro-D-gluconate-carbon source
24945581435-dehydro-D-gluconate-carbon source
2494516708adenine-hydrolysis
2494517128adipate-carbon source
2494515963ribitol-carbon source
2494527613amygdalin-carbon source
2494518305arbutin-carbon source
24945casein-hydrolysis
2494517057cellobiose-carbon source
2494517029chitin-hydrolysis
2494517108D-arabinose-carbon source
2494518333D-arabitol-carbon source
2494515824D-fructose-carbon source
2494528847D-fucose-carbon source
2494562318D-lyxose-carbon source
2494516024D-mannose-growth
2494516024D-mannose-carbon source
2494516988D-ribose-carbon source
2494516443D-tagatose-carbon source
2494565327D-xylose-carbon source
2494527689decanoate-carbon source
2494517113erythritol-carbon source
249454853esculin-carbon source
2494516813galactitol-carbon source
2494528066gentiobiose-carbon source
2494517754glycerol-carbon source
2494528087glycogen-growth
2494528087glycogen-carbon source
2494516235guanine-hydrolysis
2494517268myo-inositol-growth
2494517268myo-inositol-carbon source
2494530849L-arabinose-growth
2494530849L-arabinose-carbon source
2494518403L-arabitol-carbon source
2494518287L-fucose-carbon source
2494562345L-rhamnose-carbon source
2494517266L-sorbose-carbon source
2494565328L-xylose-carbon source
2494517716lactose-carbon source
2494517306maltose-growth
2494517306maltose-carbon source
2494529864mannitol-carbon source
249456731melezitose-carbon source
2494528053melibiose-growth
2494528053melibiose-carbon source
2494574863methyl beta-D-xylopyranoside-carbon source
2494537657methyl D-glucoside-carbon source
24945506227N-acetylglucosamine-carbon source
2494517632nitrate-reduction
2494532032potassium gluconate-carbon source
2494516634raffinose-carbon source
2494517814salicin-growth
2494517814salicin-carbon source
2494553258sodium citrate-growth
2494553258sodium citrate-carbon source
2494530911sorbitol-carbon source
2494528017starch-growth
2494528017starch-hydrolysis
2494528017starch-carbon source
2494527082trehalose-growth
2494527082trehalose-carbon source
2494527897tryptophan-energy source
2494532528turanose-carbon source
2494518186tyrosine-hydrolysis
2494515318xanthine-hydrolysis
2494517151xylitol-carbon source
2494512936D-galactose+growth
2494512936D-galactose+carbon source
2494517634D-glucose+growth
2494517634D-glucose+carbon source
249455291gelatin+hydrolysis
2494518401phenylacetate+growth
2494518401phenylacetate+carbon source
2494517992sucrose+carbon source
24945synanthrin+growth
24945synanthrin+carbon source
2494553426tween 80+hydrolysis

metabolite production

  • @ref: 24945
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 24945
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
24945acid phosphatase+3.1.3.2
24945alkaline phosphatase+3.1.3.1
24945alpha-galactosidase-3.2.1.22
24945alpha-glucosidase-3.2.1.20
24945alpha-mannosidase-3.2.1.24
24945arginine dihydrolase-3.5.3.6
24945beta-D-fucosidase-3.2.1.38
24945beta-galactosidase-3.2.1.23
24945beta-glucosidase-3.2.1.21
24945beta-glucuronidase-3.2.1.31
24945catalase+1.11.1.6
24945chymotrypsin+3.4.4.5
24945cystine arylamidase+3.4.11.3
24945cytochrome oxidase+1.9.3.1
24945DNase-
24945esterase (C 4)-
24945esterase lipase (C 8)+
24945leucyl glycin arylamidase+3.4.11.1
24945lipase (C 14)-
24945N-acetyl-beta-glucosaminidase-3.2.1.52
24945naphthol-AS-BI-phosphohydrolase+
24945trypsin+3.4.21.4
24945tryptophan deaminase-4.1.99.1
24945urease-3.5.1.5
24945valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
24945tobacco-cultivated soilChuxiong, Yunnan provinceRepublic of ChinaCHNAsiaLB agar plates20 g LB broth (Beijing Aoboxing Bio-Tech)3 days30
67770Tobacco-cultivated soil near ChuxiongYunnan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Sequence information

16S sequences

  • @ref: 24945
  • description: Lysobacter sp. RS LYSO-3 16S ribosomal RNA gene, partial sequence
  • accession: KT001243
  • length: 1410
  • database: nuccore
  • NCBI tax ID: 1749332

GC content

  • @ref: 24945
  • GC-content: 68
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24945

culture collection no.: CCIC 23922, JCM 31042, CICC 23922

literature

  • topic: Phylogeny
  • Pubmed-ID: 27411921
  • title: Lysobacter erysipheiresistens sp. nov., an antagonist of powdery mildew, isolated from tobacco-cultivated soil.
  • authors: Xie B, Li T, Lin X, Wang CJ, Chen YJ, Liu WJ, Zhao ZW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001303
  • year: 2016
  • mesh: Antibiosis, Ascomycota, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lysobacter/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Tobacco, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24945B. L. Xie, Tao,Lin, Xin,Wang, Chao-Jun,Chen, Yun-Jiao,Liu, Wei-Juan,Zhao, Zhi-WeiLysobacter erysipheiresistens sp. nov., an antagonist of powdery mildew, isolated from tobacco-cultivated soil10.1099/ijsem.0.001303IJSEM 66: 4016-4021 201627411921
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/