Strain identifier

BacDive ID: 133054

Type strain: Yes

Species: Acidicapsa acidiphila

Strain history: <- C. Falagan, Bangor Univ., Wales, U.K.; MCF10

NCBI tax ID(s): 1335627 (species)

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General

@ref: 24842

BacDive-ID: 133054

DSM-Number: 29819

keywords: 16S sequence, Bacteria

description: Acidicapsa acidiphila DSM 29819 is a bacterium that was isolated from acidic metal-mine pit lake.

NCBI tax id

  • NCBI tax id: 1335627
  • Matching level: species

strain history

  • @ref: 24842
  • history: <- C. Falagan, Bangor Univ., Wales, U.K.; MCF10

doi: 10.13145/bacdive133054.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/acidobacteriota
  • domain: Bacteria
  • phylum: Acidobacteriota
  • class: Terriglobia
  • order: Terriglobales
  • family: Acidobacteriaceae
  • genus: Acidicapsa
  • species: Acidicapsa acidiphila
  • full scientific name: Acidicapsa acidiphila Falagán et al. 2017

@ref: 24842

domain: Bacteria

phylum: Acidobacteria

class: Acidobacteriia

order: Acidobacteriales

family: Acidobacteriaceae

genus: Acidicapsa

species: Acidicapsa acidiphila

full scientific name: Acidicapsa acidiphila Falagán et al. 2017

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24842
  • name: GRANULICELLA PALUDICOLA MEDIUM (DSMZ Medium 1285)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1285
  • composition: Name: GRANULICELLA PALUDICOLA MEDIUM (DSMZ Medium 1285) Composition: Agar 15.0 g/l Fructose 0.5 g/l KH2PO4 0.1 g/l (NH4)2SO4 0.1 g/l Casamino acids 0.05 g/l Yeast extract 0.05 g/l MgSO4 x 7 H2O 0.04 g/l CaCl2 x 2 H2O 0.02 g/l Distilled water

culture temp

  • @ref: 24842
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24842-----+-+-------------

Isolation, sampling and environmental information

isolation

  • @ref: 24842
  • sample type: acidic metal-mine pit lake
  • geographic location: Iberian Pyrite Belt, Huelva, Cueva de la Mora
  • country: Spain
  • origin.country: ESP
  • continent: Europe
  • latitude: 37.6019
  • longitude: -7.3067

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Environmental#Aquatic#Lake (large)
#Condition#Acidic

taxonmaps

  • @ref: 69479
  • File name: preview.99_96437.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_236;96_11435;97_13842;98_17069;99_96437&stattab=map
  • Last taxonomy: Acidicapsa
  • 16S sequence: KF017280
  • Sequence Identity:
  • Total samples: 82
  • soil counts: 15
  • aquatic counts: 65
  • animal counts: 1
  • plant counts: 1

Safety information

risk assessment

  • @ref: 24842
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24842
  • description: Acidicapsa acidiphila strain MCF10 16S ribosomal RNA gene, partial sequence
  • accession: KF017280
  • length: 1205
  • database: nuccore
  • NCBI tax ID: 1335627

GC content

  • @ref: 24842
  • GC-content: 59.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24842

culture collection no.: DSM 29819, NCCB 100576, MCF 10

straininfo link

  • @ref: 91321
  • straininfo: 405825

literature

  • topic: Phylogeny
  • Pubmed-ID: 28229259
  • title: Acidicapsa ferrireducens sp. nov., Acidicapsa acidiphila sp. nov., and Granulicella acidiphila sp. nov.: novel acidobacteria isolated from metal-rich acidic waters.
  • authors: Falagan C, Foesel B, Johnson B
  • journal: Extremophiles
  • DOI: 10.1007/s00792-017-0916-4
  • year: 2017
  • mesh: Acidobacteria/classification/genetics/*isolation & purification/metabolism, Base Composition, Iron/analysis/*metabolism, Lakes/chemistry/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Water Microbiology
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24842Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29819Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29819)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91321Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405825.1