General

@ref: 24842

BacDive-ID: 133054

DSM-Number: 29819

keywords: 16S sequence, Bacteria, mesophilic

description: Acidicapsa acidiphila DSM 29819 is a mesophilic bacterium that was isolated from acidic metal-mine pit lake.

NCBI tax id

• NCBI tax id: 1335627
• Matching level: species

strain history

• @ref: 24842
• history: <- C. Falagan, Bangor Univ., Wales, U.K.; MCF10

doi: 10.13145/bacdive133054.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/acidobacteriota
• domain: Bacteria
• phylum: Acidobacteriota
• class: Terriglobia
• order: Terriglobales
• family: Acidobacteriaceae
• genus: Acidicapsa
• species: Acidicapsa acidiphila
• full scientific name: Acidicapsa acidiphila Falagán et al. 2017

@ref: 24842

domain: Bacteria

phylum: Acidobacteria

class: Acidobacteriia

order: Acidobacteriales

family: Acidobacteriaceae

genus: Acidicapsa

species: Acidicapsa acidiphila

full scientific name: Acidicapsa acidiphila Falagán et al. 2017

type strain: yes

Culture and growth conditions

culture medium

• @ref: 24842
• name: GRANULICELLA PALUDICOLA MEDIUM (DSMZ Medium 1285)
• growth: yes
• link: https://mediadive.dsmz.de/medium/1285
• composition: Name: GRANULICELLA PALUDICOLA MEDIUM (DSMZ Medium 1285) Composition: Agar 15.0 g/l Fructose 0.5 g/l KH2PO4 0.1 g/l (NH4)2SO4 0.1 g/l Casamino acids 0.05 g/l Yeast extract 0.05 g/l MgSO4 x 7 H2O 0.04 g/l CaCl2 x 2 H2O 0.02 g/l Distilled water

culture temp

• @ref: 24842
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Physiology and metabolism

metabolite utilization

metabolite production

• @ref: 68369
• Chebi-ID: 35581
• metabolite: indole
• production: no

metabolite tests

• @ref: 68369
• Chebi-ID: 35581
• metabolite: indole
• indole test: -

enzymes

API 20NE

Isolation, sampling and environmental information

isolation

• @ref: 24842
• sample type: acidic metal-mine pit lake
• geographic location: Iberian Pyrite Belt, Huelva, Cueva de la Mora
• country: Spain
• origin.country: ESP
• continent: Europe
• latitude: 37.6019
• longitude: -7.3067

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_96437.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_236;96_11435;97_13842;98_17069;99_96437&stattab=map
• Last taxonomy: Acidicapsa
• 16S sequence: KF017280
• Sequence Identity:
• Total samples: 82
• soil counts: 15
• aquatic counts: 65
• animal counts: 1
• plant counts: 1

Safety information

risk assessment

• @ref: 24842
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 24842
• description: Acidicapsa acidiphila strain MCF10 16S ribosomal RNA gene, partial sequence
• accession: KF017280
• length: 1205
• database: ena
• NCBI tax ID: 1335627

GC content

• @ref: 24842
• GC-content: 59.7
• method: high performance liquid chromatography (HPLC)

External links

@ref: 24842

culture collection no.: DSM 29819, NCCB 100576, MCF 10

straininfo link

• @ref: 91321
• straininfo: 405825

literature

• topic: Phylogeny
• Pubmed-ID: 28229259
• title: Acidicapsa ferrireducens sp. nov., Acidicapsa acidiphila sp. nov., and Granulicella acidiphila sp. nov.: novel acidobacteria isolated from metal-rich acidic waters.
• authors: Falagan C, Foesel B, Johnson B
• journal: Extremophiles
• DOI: 10.1007/s00792-017-0916-4
• year: 2017
• mesh: Acidobacteria/classification/genetics/*isolation & purification/metabolism, Base Composition, Iron/analysis/*metabolism, Lakes/chemistry/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Water Microbiology
• topic2: Metabolism

Reference