Acidicapsa acidiphila (DSM 29819, NCCB 100576, MCF 10)

Name: Acidicapsa acidiphila (DSM 29819, NCCB 100576, MCF 10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133054

Type strain

Culture col. no. DSM 29819 NCCB 100576 MCF 10

NCBI tax ID(s) 1335627

Special Collections DSMZ

History <- C. Falagan, Bangor Univ., Wales, U.K.; MCF10

Links

Acidicapsa acidiphila DSM 29819 is a bacterium that was isolated from acidic metal-mine pit lake.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 405825

NCCB 100576,DSM 29819

@ref 20215

Last LPSN update 2026-02-09 11:31:51

Domain Bacteria

Phylum Acidobacteriota

Class Terriglobia

Order Terriglobales

Family Acidobacteriaceae

Genus Acidicapsa

Species Acidicapsa acidiphila

Full scientific name Acidicapsa acidiphila Falagán et al. 2017

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24842	GRANULICELLA PALUDICOLA MEDIUM (DSMZ Medium 1285)		Medium recipe at MediaDive	Name: GRANULICELLA PALUDICOLA MEDIUM (DSMZ Medium 1285) Composition: Agar 15.0 g/l Fructose 0.5 g/l KH2PO4 0.1 g/l (NH4)2SO4 0.1 g/l Casamino acids 0.05 g/l Yeast extract 0.05 g/l MgSO4 x 7 H2O 0.04 g/l CaCl2 x 2 H2O 0.02 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24842	positive	growth	30

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
24842	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Environmental	#Aquatic	#Lake (large)
#Condition	#Acidic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24842	acidic metal-mine pit lake	Iberian Pyrite Belt, Huelva, Cueva de la Mora	Spain	ESP	Europe	37.6019	-7.3067 37.6019/-7.3067

Taxonmaps

69479

Global distribution of 16S sequence KF017280 (>99% sequence identity) for Acidicapsa from Microbeatlas

Aquatic Samples	65
Soil Samples	15
Animal Samples	1
Plant Samples	1
Total Samples	82

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24842	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24842	Acidicapsa acidiphila strain MCF10 16S ribosomal RNA gene, partial sequence	KF017280	1205		1335627
124043	Acidicapsa acidiphila strain DSM 29819 16S ribosomal RNA gene, partial sequence.	PV643426	1447		1335627

GC content

@ref	GC-content (mol%)	Method
24842	59.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidicapsa ferrireducens sp. nov., Acidicapsa acidiphila sp. nov., and Granulicella acidiphila sp. nov.: novel acidobacteria isolated from metal-rich acidic waters.	Falagan C, Foesel B, Johnson B	Extremophiles	10.1007/s00792-017-0916-4	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24842	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29819
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidicapsa acidiphila (DSM 29819, NCCB 100576, MCF 10)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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