Strain identifier

BacDive ID: 132997

Type strain: Yes

Species: Aureimonas pseudogalii

Strain Designation: PP-CE-2G-454

Strain history: CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain PP-CE-2G-454

NCBI tax ID(s): 1744844 (species)

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General

@ref: 24785

BacDive-ID: 132997

DSM-Number: 102238

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Aureimonas pseudogalii PP-CE-2G-454 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from phyllosphere of Galium album Mill leaves.

NCBI tax id

  • NCBI tax id: 1744844
  • Matching level: species

strain history

@refhistory
24785<- S. Glaeser, Justus-Liebig-Universität, Giessen, Germany; PP-CE-2G-454 <- E. Aydogan
121989CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain PP-CE-2G-454

doi: 10.13145/bacdive132997.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Aurantimonadaceae
  • genus: Aureimonas
  • species: Aureimonas pseudogalii
  • full scientific name: Aureimonas pseudogalii Aydogan et al. 2016

@ref: 24785

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Aurantimonadaceae

genus: Aureimonas

species: Aureimonas pseudogalii

full scientific name: Aureimonas pseudogalii Aydogan et al. 2016

strain designation: PP-CE-2G-454

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
43149negative2.1-2.7 µm1.0-1.1 µmrod-shapedno
69480negative99.969
121989negativerod-shapedyes

colony morphology

  • @ref: 43149
  • colony color: yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: R2A

pigmentation

  • @ref: 43149
  • production: no
  • name: flexirubin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41618MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
43149Reasoner's 2A agar (R2A)yes
43149Nutrient brothyes
43149K7yes
43149M65yes
43149PYE agaryes
43149malt agaryes
43149LB (Luria-Bertani) MEDIUMyes
43149CASOyes
43149Trypticase Soy Agar (TSA)yes
43149Columbia agar with sheep bloodyes
43149glycine arginineyes
43149DEVyes
43149Nutrient agar (NA)yes
43149Marine agar (MA)yes
43149MacConkey agarno
24785HALF STRENGTH R2A (DSMZ Medium 1492)yesName: HALF STRENGTH R2A (DSMZ Medium 1492) Composition: Agar 15.0 g/l Casamino acids 0.25 g/l Na-pyruvate 0.25 g/l Starch 0.25 g/l Glucose 0.25 g/l Proteose peptone 0.25 g/l Yeast extract 0.25 g/l K2HPO4 0.15 g/l MgSO4 x 7 H2O 0.025 g/l Distilled waterhttps://mediadive.dsmz.de/medium/1492
121989CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
41618positivegrowth25mesophilic
43149inconsistentgrowth4psychrophilic
43149nogrowth30mesophilic
43149positiveoptimum20-28
24785positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43149positivegrowth5.5-9.0alkaliphile
43149inconsistentgrowth5
43149positiveminimum5.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43149aerobe
43149microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

  • @ref: 43149
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
431495291gelatin-degradation
4314916708adenine-degradation
43149casein-degradation
4314918186tyrosine-degradation
4314937166xylan-degradation
4314915318xanthine+/-degradation
4314917368hypoxanthine-degradation
4314917234glucose-degradation
4314928017starch-degradation
4314917234glucose-fermentation
4314917632nitrate-reduction
431495291gelatin-hydrolysis
4314927689decanoate-assimilation
4314917128adipate-assimilation
4314953258sodium citrate-assimilation
4314918401phenylacetate-assimilation
431494853esculin+hydrolysis
4314917234glucose+assimilation
4314930849L-arabinose+assimilation
4314916024D-mannose+/-assimilation
4314916899D-mannitol+assimilation
4314917306maltose+/-assimilation
4314932032potassium gluconate+/-assimilation
4314925115malate+/-assimilation
43149506227N-acetylglucosamine+/-assimilation
4314917754glycerol-builds acid from
4314917113erythritol-builds acid from
4314917108D-arabinose+builds acid from
4314930849L-arabinose+builds acid from
4314916988D-ribose+builds acid from
4314965327D-xylose+builds acid from
4314965328L-xylose+builds acid from
4314915963ribitol+/-builds acid from
4314974863methyl beta-D-xylopyranoside+/-builds acid from
4314912936D-galactose+builds acid from
4314917634D-glucose+builds acid from
4314915824D-fructose-builds acid from
4314916024D-mannose+builds acid from
4314917266L-sorbose-builds acid from
4314962345L-rhamnose+builds acid from
4314916813galactitol-builds acid from
4314917268myo-inositol-builds acid from
4314916899D-mannitol-builds acid from
4314917924D-sorbitol-builds acid from
4314943943methyl alpha-D-mannoside-builds acid from
43149320061methyl alpha-D-glucopyranoside-builds acid from
4314927613amygdalin-builds acid from
4314918305arbutin-builds acid from
4314917814salicin-builds acid from
4314917057cellobiose-builds acid from
4314917306maltose-builds acid from
4314917716lactose-builds acid from
4314928053melibiose+builds acid from
4314917992sucrose-builds acid from
4314916551D-trehalose-builds acid from
4314915443inulin-builds acid from
431496731melezitose-builds acid from
4314916634raffinose-builds acid from
4314928017starch-builds acid from
4314928087glycogen-builds acid from
4314917151xylitol-builds acid from
4314928066gentiobiose-builds acid from
4314932528turanose-builds acid from
4314962318D-lyxose-builds acid from
4314916443D-tagatose-builds acid from
4314928847D-fucose+builds acid from
4314918287L-fucose+/-builds acid from
4314918333D-arabitol-builds acid from
4314918403L-arabitol-builds acid from
4314924265gluconate-builds acid from
43149168082-dehydro-D-gluconate-builds acid from
43149581435-dehydro-D-gluconate-builds acid from
43149506227N-acetylglucosamine-builds acid from
43149esculin ferric citrate+builds acid from

metabolite production

  • @ref: 43149
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43149catalase+1.11.1.6
43149cytochrome oxidase+1.9.3.1
43149arginine dihydrolase-3.5.3.6
43149urease+3.5.1.5
43149leucine arylamidase+3.4.11.1
43149acid phosphatase+3.1.3.2
43149alpha-glucosidase+3.2.1.20
43149naphthol-AS-BI-phosphohydrolase+/-
43149alkaline phosphatase+/-3.1.3.1
43149esterase (C 4)+/-
43149esterase Lipase (C 8)+/-
43149cystine arylamidase+/-3.4.11.3
43149beta-galactosidase-3.2.1.23
43149N-acetyl-beta-glucosaminidase-3.2.1.52
43149alpha-mannosidase-3.2.1.24
43149alpha-fucosidase-3.2.1.51
43149beta-glucuronidase-3.2.1.31
43149lipase (C 14)+/-
43149trypsin+/-3.4.21.4
43149alpha-chymotrypsin+/-3.4.21.1
43149valine arylamidase+/-
43149alpha-galactosidase+/-3.2.1.22
43149beta-glucosidase-3.2.1.21

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43149C16:08.8
    43149C18:1ω7c80.9
    43149C16:1ω7c / C16:1ω8c7.2
    43149cyclo-C19:0ω8c3.4
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 2
  • system: MIS MIDI
  • method/protocol: Kämpfer & Kroppenstedt 1996

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitudesampling dateisolation date
24785phyllosphere of Galium album Mill leavesGalium albumnear Giessen, 'Environmental Monitoring and Climate Impact Research Station Linden-Leihgestern' of the Justus-Liebig University of Giessen (50° 32' N 8° 41.3' E)GermanyDEUEurope50.53338.6883
43149phyllosphere of Galium album leavesLinden-Leihgestern near Giessen, GermanyGermanyDEUEurope5082014-05-12
121989Environment, Phyllosphere of Gallium mollugoGiessen, HessenGermanyDEUEurope2014-08-28

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

taxonmaps

  • @ref: 69479
  • File name: preview.99_7887.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1582;97_4494;98_5764;99_7887&stattab=map
  • Last taxonomy: Aureimonas
  • 16S sequence: KT806079
  • Sequence Identity:
  • Total samples: 7832
  • soil counts: 1479
  • aquatic counts: 890
  • animal counts: 2682
  • plant counts: 2781

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
247851Risk group (German classification)
1219891Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24785
  • description: Aureimonas pseudogalii strain PP-CE-2G-454 16S ribosomal RNA gene, partial sequence
  • accession: KT806079
  • length: 1390
  • database: ena
  • NCBI tax ID: 1744844

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aureimonas pseudogalii DSM 102238GCA_014196835scaffoldncbi1744844
66792Aureimonas pseudogalii strain DSM 1022381744844.3wgspatric1744844
66792Aureimonas pseudogalii DSM 1022382829993952draftimg1744844

GC content

@refGC-contentmethod
4314968.9Thermal denaturation, fluorometry
2478568.9fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno85.578yes
gram-positiveno97.352no
anaerobicno97.056yes
aerobicyes91.493no
halophileno90.536yes
spore-formingno94.999no
glucose-utilyes92.423yes
thermophileno99.176yes
motileyes76.646yes
glucose-fermentno87.74yes

External links

@ref: 24785

culture collection no.: DSM 102238, CCM 8665, LMG 29411, CIP 111015

straininfo link

  • @ref: 91273
  • straininfo: 396778

literature

  • topic: Phylogeny
  • Pubmed-ID: 27255762
  • title: Aureimonas galii sp. nov. and Aureimonas pseudogalii sp. nov. isolated from the phyllosphere of Galium album.
  • authors: Aydogan EL, Busse HJ, Moser G, Muller C, Kampfer P, Glaeser SP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001200
  • year: 2016
  • mesh: Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Galium/*microbiology, Germany, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24785Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102238Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102238)
41618Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34627
43149Ebru L. Aydogan, Hans-Jürgen Busse, Gerald Moser, Christoph Müller, Peter Kämpfer and Stefanie P. GlaeserAureimonas galii sp. nov. and Aureimonas pseudogalii sp. nov. isolated from the phyllosphere of Galium album10.1099/ijsem.0.001200IJSEM 66: 3345-3354 201627255762
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91273Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396778.1
121989Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111015Collection of Institut Pasteur (CIP 111015)