Name: Aureimonas pseudogalii PP-CE-2G-454
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132997

Type strain:

Species: Aureimonas pseudogalii

Strain Designation: PP-CE-2G-454

Culture col. no.: DSM 102238, CCM 8665, LMG 29411, CIP 111015

Strain history: CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain PP-CE-2G-454

NCBI tax ID(s): 1744844 (species)

SI-ID 396778

DSM 102238

Section

Aureimonas pseudogalii PP-CE-2G-454 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from phyllosphere of Galium album Mill leaves.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Aurantimonadaceae*
	Genus	*Aureimonas*
	Species	**Aureimonas pseudogalii**
	Full Scientific Name (LPSN)	Aureimonas pseudogalii Aydogan et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43149]	Gram stain	negative
[Ref.: #121989]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.969

[Ref.: #43149]	Cell length	2.1-2.7 µm

[Ref.: #43149]	Cell width	1.0-1.1 µm

[Ref.: #43149]	Cell shape	rod-shaped
[Ref.: #121989]	Cell shape	rod-shaped

[Ref.: #43149]	Motility	no
[Ref.: #121989]	Motility	yes

[Ref.: #43149]	Colony color	yellow
[Ref.: #43149]	Colony shape	circular
[Ref.: #43149]	Incubation period	3 days
[Ref.: #43149]	Cultivation medium used	R2A

[Ref.: #43149]	Pigment production	no
[Ref.: #43149]	Pigment name	flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41618]

Culture medium

MEDIUM 72- for trypto casein soja agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient broth

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Culture medium growth

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Culture medium

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Culture medium growth

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Culture medium

M65

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Culture medium

PYE agar

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Culture medium growth

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Culture medium

malt agar

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

CASO

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

Columbia agar with sheep blood

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Culture medium growth

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Culture medium

glycine arginine

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Culture medium growth

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Culture medium

DEV

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

HALF STRENGTH R2A (DSMZ Medium 1492)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #24785]

Culture medium composition

expand / minimize

[Ref.: #121989]

Culture medium

CIP Medium 72

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Culture medium growth

[Ref.: #121989]

Culture medium link

Medium recipe provided by DSMZ

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Culture medium

MacConkey agar

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #24785]		growth	28 °C
[Ref.: #41618]		growth	25 °C
[Ref.: #43149]	inconsistent	growth	4 °C
[Ref.: #43149]	no	growth	30 °C
[Ref.: #43149]		optimum	20-28 °C

[Ref.: #24785]	Temperature range	mesophilic
[Ref.: #41618]	Temperature range	mesophilic
[Ref.: #43149]	Temperature range	psychrophilic
[Ref.: #43149]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #43149]		minimum	5.5
[Ref.: #43149]		growth	5.5-9.0
[Ref.: #43149]	inconsistent	growth	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43149]	Oxygen tolerance	aerobe
[Ref.: #43149]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43149]		NaCl		growth	0-1.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43149]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43149]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43149]	adenine ChEBI	-	degradation
[Ref.: #43149]	adipate ChEBI	-	assimilation
[Ref.: #43149]	amygdalin ChEBI	-	builds acid from
[Ref.: #43149]	arbutin ChEBI	-	builds acid from
[Ref.: #43149]	casein	-	degradation
[Ref.: #43149]	cellobiose ChEBI	-	builds acid from
[Ref.: #43149]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43149]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43149]	D-fructose ChEBI	-	builds acid from
[Ref.: #43149]	D-fucose ChEBI	+	builds acid from
[Ref.: #43149]	D-galactose ChEBI	+	builds acid from
[Ref.: #43149]	D-glucose ChEBI	+	builds acid from
[Ref.: #43149]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43149]	D-mannitol ChEBI	+	assimilation
[Ref.: #43149]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43149]	D-mannose ChEBI	+/-	assimilation
[Ref.: #43149]	D-mannose ChEBI	+	builds acid from
[Ref.: #43149]	D-ribose ChEBI	+	builds acid from
[Ref.: #43149]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43149]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43149]	D-trehalose ChEBI	-	builds acid from
[Ref.: #43149]	D-xylose ChEBI	+	builds acid from
[Ref.: #43149]	decanoate ChEBI	-	assimilation
[Ref.: #43149]	erythritol ChEBI	-	builds acid from
[Ref.: #43149]	esculin ChEBI	+	hydrolysis
[Ref.: #43149]	esculin ferric citrate	+	builds acid from
[Ref.: #43149]	galactitol ChEBI	-	builds acid from
[Ref.: #43149]	gelatin ChEBI	-	degradation
[Ref.: #43149]	gelatin ChEBI	-	hydrolysis
[Ref.: #43149]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43149]	gluconate ChEBI	-	builds acid from
[Ref.: #43149]	glucose ChEBI	-	degradation
[Ref.: #43149]	glucose ChEBI	-	fermentation
[Ref.: #43149]	glucose ChEBI	+	assimilation
[Ref.: #43149]	glycerol ChEBI	-	builds acid from
[Ref.: #43149]	glycogen ChEBI	-	builds acid from
[Ref.: #43149]	hypoxanthine ChEBI	-	degradation
[Ref.: #43149]	inulin ChEBI	-	builds acid from
[Ref.: #43149]	L-arabinose ChEBI	+	assimilation
[Ref.: #43149]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43149]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43149]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #43149]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43149]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43149]	L-xylose ChEBI	+	builds acid from
[Ref.: #43149]	lactose ChEBI	-	builds acid from
[Ref.: #43149]	malate ChEBI	+/-	assimilation
[Ref.: #43149]	maltose ChEBI	+/-	assimilation
[Ref.: #43149]	maltose ChEBI	-	builds acid from
[Ref.: #43149]	melezitose ChEBI	-	builds acid from
[Ref.: #43149]	melibiose ChEBI	+	builds acid from
[Ref.: #43149]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43149]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43149]	methyl beta-D-xylopyranoside ChEBI	+/-	builds acid from
[Ref.: #43149]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43149]	N-acetylglucosamine ChEBI	+/-	assimilation
[Ref.: #43149]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43149]	nitrate ChEBI	-	reduction
[Ref.: #43149]	phenylacetate ChEBI	-	assimilation
[Ref.: #43149]	potassium gluconate ChEBI	+/-	assimilation
[Ref.: #43149]	raffinose ChEBI	-	builds acid from
[Ref.: #43149]	ribitol ChEBI	+/-	builds acid from
[Ref.: #43149]	salicin ChEBI	-	builds acid from
[Ref.: #43149]	sodium citrate ChEBI	-	assimilation
[Ref.: #43149]	starch ChEBI	-	degradation
[Ref.: #43149]	starch ChEBI	-	builds acid from
[Ref.: #43149]	sucrose ChEBI	-	builds acid from
[Ref.: #43149]	turanose ChEBI	-	builds acid from
[Ref.: #43149]	tyrosine ChEBI	-	degradation
[Ref.: #43149]	xanthine ChEBI	+/-	degradation
[Ref.: #43149]	xylan ChEBI	-	degradation
[Ref.: #43149]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43149]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43149]	acid phosphatase	+	3.1.3.2
[Ref.: #43149]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #43149]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43149]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43149]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43149]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43149]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43149]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43149]	beta-galactosidase	-	3.2.1.23
[Ref.: #43149]	beta-glucosidase	-	3.2.1.21
[Ref.: #43149]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43149]	catalase	+	1.11.1.6
[Ref.: #43149]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43149]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43149]	esterase (C 4)	+/-
[Ref.: #43149]	esterase Lipase (C 8)	+/-
[Ref.: #43149]	leucine arylamidase	+	3.4.11.1
[Ref.: #43149]	lipase (C 14)	+/-
[Ref.: #43149]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43149]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43149]	trypsin	+/-	3.4.21.4
[Ref.: #43149]	urease	+	3.5.1.5
[Ref.: #43149]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43149]

Fatty acid	Percentage
C18:1ω7c	80.9
C16:0	8.8
C16:1ω7c / C16:1ω8c	7.2
cyclo-C19:0ω8c	3.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24785]	Sample type/isolated from	phyllosphere of Galium album Mill leaves
[Ref.: #24785]	Host species	Galium album
[Ref.: #24785]	Geographic location (country and/or sea, region)	near Giessen, 'Environmental Monitoring and Climate Impact Research Station Linden-Leihgestern' of the Justus-Liebig University of Giessen (50° 32' N 8° 41.3' E)
[Ref.: #24785]	Country	Germany
[Ref.: #24785]	Country ISO 3 Code	DEU
[Ref.: #24785]	Continent	Europe
[Ref.: #24785]	Geographic location	50.5333°/8.6883°

[Ref.: #43149]	Sample type/isolated from	phyllosphere of Galium album leaves
[Ref.: #43149]	Sampling date	2014-05-12
[Ref.: #43149]	Geographic location (country and/or sea, region)	Linden-Leihgestern near Giessen, Germany
[Ref.: #43149]	Country	Germany
[Ref.: #43149]	Country ISO 3 Code	DEU
[Ref.: #43149]	Continent	Europe
[Ref.: #43149]	Geographic location	50.0000°/8.0000°

[Ref.: #121989]	Sample type/isolated from	Environment, Phyllosphere of Gallium mollugo
[Ref.: #121989]	Geographic location (country and/or sea, region)	Giessen, Hessen
[Ref.: #121989]	Country	Germany
[Ref.: #121989]	Country ISO 3 Code	DEU
[Ref.: #121989]	Continent	Europe
[Ref.: #121989]	Isolation date	2014-08-28
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT806079 (>99% sequence identity) for Aureimonas from Microbeatlas

Aquatic Samples	890
Soil Samples	1479
Animal Samples	2682
Plant Samples	2781
Total Samples	7832

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24785]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121989]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24785]	Aureimonas pseudogalii strain PP-CE-2G-454 16S ribosomal RNA gene, partial sequence	KT806079	1390	ENA	1744844 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aureimonas pseudogalii DSM 102238	GCA_014196835	scaffold	GenBank	1744844 tax ID	*
[Ref.: #66792]	Aureimonas pseudogalii strain DSM 102238	1744844.3	wgs	PATRIC	1744844 tax ID	*
[Ref.: #66792]	Aureimonas pseudogalii DSM 102238	2829993952	draft	JGI IMG/M	1744844 tax ID	*

[Ref.: #43149]	GC-content	68.9 mol%	Thermal denaturation, fluorometry
[Ref.: #24785]	GC-content	68.9 mol%	fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aureimonas pseudogalii DSM 102238 NCBI: GCA_014196835.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aureimonas pseudogalii DSM 102238 NCBI: GCA_014196835.1
[Ref.: #69480]	flagellated	no	85.578	yes
[Ref.: #69480]	gram-positive	no	97.352	no
[Ref.: #69480]	anaerobic	no	97.056	yes
[Ref.: #69480]	aerobic	yes	91.493	no
[Ref.: #69480]	halophile	no	90.536	yes
[Ref.: #69480]	spore-forming	no	94.999	no
[Ref.: #69480]	glucose-util	yes	92.423	yes
[Ref.: #69480]	thermophile	no	99.176	yes
[Ref.: #69480]	motile	yes	76.646	yes
[Ref.: #69480]	glucose-ferment	no	87.74	yes

Availability in culture collections External links

[Ref.: #24785]

Culture collection no.

DSM 102238, CCM 8665, LMG 29411, CIP 111015

[Ref.: #91273]

SI-ID 396778

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aureimonas galii sp. nov. and Aureimonas pseudogalii sp. nov. isolated from the phyllosphere of Galium album.	Aydogan EL, Busse HJ, Moser G, Muller C, Kampfer P, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001200	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24785

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102238

#41618 ; Curators of the CIP;

#43149

Ebru L. Aydogan, Hans-Jürgen Busse, Gerald Moser, Christoph Müller, Peter Kämpfer and Stefanie P. Glaeser: Aureimonas galii sp. nov. and Aureimonas pseudogalii sp. nov. isolated from the phyllosphere of Galium album. IJSEM 66: 3345 - 3354 2016 ( DOI 10.1099/ijsem.0.001200 , PubMed 27255762 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91273

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396778.1 )

#121989 Collection of Institut Pasteur ; Curators of the CIP; CIP 111015
* These data were automatically processed and therefore are not curated

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Aureimonas pseudogalii DSM 102238

Aureimonas pseudogalii DSM 102238

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