Strain identifier
BacDive ID: 132836
Type strain: 
Species: Zymomonas mobilis
Variant: Isotype of BacDive ID 14289
Strain history: <- C. Drainas, Univ. Ioannina, Dept. Chemistry, Greece; ATCC 10988
NCBI tax ID(s): 542 (species)
version 8.1 (current version)
General
@ref: 24624
BacDive-ID: 132836
DSM-Number: 12496
keywords: Bacteria, mesophilic
description: Zymomonas mobilis DSM 12496 is a mesophilic bacterium of the family Zymomonadaceae.
NCBI tax id
- NCBI tax id: 542
- Matching level: species
strain history
- @ref: 24624
- history: <- C. Drainas, Univ. Ioannina, Dept. Chemistry, Greece; ATCC 10988
doi: 10.13145/bacdive132836.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Zymomonadaceae
- genus: Zymomonas
- species: Zymomonas mobilis
- full scientific name: Zymomonas mobilis corrig. (Lindner 1928) Kluyver and van Niel 1936 (Approved Lists 1980)
synonyms
@ref synonym 20215 Zymomonas mobile 20215 Thermobacterium mobile
@ref: 24624
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Zymomonadaceae
genus: Zymomonas
species: Zymomonas mobilis
full scientific name: Zymomonas mobilis (Lindner 1928) Kluyver and van Niel 1936
variant: Isotype of BacDive ID 14289
type strain: no
Culture and growth conditions
culture medium
- @ref: 24624
- name: ZYMOMONAS MEDIUM (DSMZ Medium 10)
- growth: yes
- link: https://mediadive.dsmz.de/medium/10
- composition: Name: ZYMOMONAS MEDIUM (DSMZ Medium 10) Composition: Glucose 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Bacto peptone 10.0 g/l Distilled water
culture temp
- @ref: 24624
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 24624
- compound: lactose
Safety information
risk assessment
- @ref: 24624
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 24624
- GC-content: 49.1
External links
@ref: 24624
culture collection no.: DSM 12496, CCUG 17860, CIP 102538, JCM 20722, LMG 404, NCAIM B.01327, ATCC 10988, NRRL B-806
straininfo link
- @ref: 91125
- straininfo: 13909
literature
| Pubmed-ID | title | authors | journal | DOI | year | mesh | topic | topic2 |
|---|---|---|---|---|---|---|---|---|
| 2349282 | Analysis and stability of Zymomonas mobilis ATCC 10988 plasmid pZMO3. | Scordaki A, Drainas C | Plasmid | 10.1016/0147-619x(90)90044-d | 1990 | Chromosomes, Bacterial, Conjugation, Genetic, DNA, Bacterial/genetics, Gram-Negative Bacteria/*genetics, *Plasmids, Restriction Mapping, Sequence Homology, Nucleic Acid | ||
| 3309139 | Expression and stability of a recombinant plasmid in Zymomonas mobilis and Escherichia coli. | Afendra AS, Drainas C | J Gen Microbiol | 10.1099/00221287-133-1-127 | 1987 | DNA, Bacterial, DNA, Recombinant, Electrophoresis, Agar Gel, Escherichia coli/*genetics, *Gene Expression Regulation, *Genetic Vectors, Gram-Negative Anaerobic Bacteria/*genetics, *Plasmids, *Transformation, Bacterial | Enzymology | |
| 6856691 | Comparison of plasmids in strains of Zymomonas mobilis. | Stokes HW, Dally EL, Yablonsky MD, Eveleigh DE | Plasmid | 10.1016/0147-619x(83)90016-1 | 1983 | Anti-Bacterial Agents/pharmacology, Bacteria/drug effects/*genetics, DNA, Bacterial/genetics, Drug Resistance, Microbial, Molecular Weight, Nucleic Acid Hybridization, *Plasmids, Species Specificity | Phylogeny | Pathogenicity |
| 8086457 | Nucleotide and derived amino acid sequences of an extracellular sucrase gene (invB) of Zymomonas mobilis ZM1 (ATCC10988). | Song KB, Lee SK, Joo HK, Rhee SK | Biochim Biophys Acta | 10.1016/0167-4781(94)90262-3 | 1994 | Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, Genes, Bacterial/*genetics, Molecular Sequence Data, Sequence Analysis, Sequence Homology, Amino Acid, Sucrase/*genetics/metabolism, Zymomonas/enzymology/*genetics | Enzymology | Metabolism |
| 8318541 | Nucleotide sequence of levansucrase gene (levU) of Zymomonas mobilis ZM1 (ATCC10988). | Song KB, Joo HK, Rhee SK | Biochim Biophys Acta | 10.1016/0167-4781(93)90130-6 | 1993 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, *Genes, *Genes, Bacterial, Hexosyltransferases/*genetics, Molecular Sequence Data, Zymomonas/enzymology/*genetics | Enzymology | Genetics |
| 8441765 | An ultraviolet-sensitive mutant of Zymomonas mobilis affecting the stability of its natural plasmid pZMO2. | Vartholomatos G, Typas MA, Drainas C | Plasmid | 10.1006/plas.1993.1002 | 1993 | Conjugation, Genetic, DNA Repair/genetics/radiation effects, Drug Resistance, Microbial/genetics, Genes, Bacterial, Genetic Complementation Test, Methyl Methanesulfonate, Mutation, Plasmids/*radiation effects, Restriction Mapping, Ultraviolet Rays, Zymomonas/drug effects/*genetics/radiation effects | Pathogenicity | |
| 9887309 | Characterization of the mobilization region of the Zymomonas mobilis ATCC10988 plasmid pZMO3. | Afendra AS, Vartholomatos G, Arvanitis N, Drainas C | Plasmid | 10.1006/plas.1998.1374 | 1999 | Bacterial Proteins/genetics, Base Sequence, Conjugation, Genetic, Gene Deletion, Gene Transfer Techniques, Molecular Sequence Data, Open Reading Frames, Plasmids/*genetics, Recombinant Proteins/genetics, Zymomonas/*genetics | Genetics | |
| 10964623 | Characterization and replication properties of the Zymomonas mobilis ATCC 10988 plasmids pZMO1 and pZMO2. | Arvanitis N, Pappas KM, Kolios G, Afendra AS, Typas MA, Drainas C | Plasmid | 10.1006/plas.2000.1480 | 2000 | Amino Acid Sequence, Bacterial Proteins/chemistry/genetics, Base Sequence, Conjugation, Genetic, DNA Helicases/chemistry/*genetics, *DNA Replication, DNA, Single-Stranded/chemistry/genetics, *DNA-Binding Proteins, Molecular Sequence Data, Open Reading Frames, Plasmids/*genetics, Sequence Alignment, Sequence Homology, Amino Acid, Trans-Activators/chemistry/*genetics, Zymomonas/*genetics | Genetics | |
| 11381333 | A simple and efficient method for the purification of membrane-bound levansucrase from Zymomonas mobilis. | Vigants A, Hicke HG, Marx SP | Curr Microbiol | 10.1007/s002840010239 | 2001 | Cell Membrane/enzymology, Chromatography/methods, Chromatography, Ion Exchange/methods, Electrophoresis, Polyacrylamide Gel/methods, Hexosyltransferases/*isolation & purification, Kinetics, Zymomonas/*enzymology/physiology | Enzymology | Phylogeny |
| 15592456 | The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. | Seo JS, Chong H, Park HS, Yoon KO, Jung C, Kim JJ, Hong JH, Kim H, Kim JH, Kil JI, Park CJ, Oh HM, Lee JS, Jin SJ, Um HW, Lee HJ, Oh SJ, Kim JY, Kang HL, Lee SY, Lee KJ, Kang HS | Nat Biotechnol | 10.1038/nbt1045 | 2004 | Biological Transport, DNA/chemistry, Ethanol/chemistry/metabolism, Genome, *Genome, Bacterial, Ketoglutarate Dehydrogenase Complex/metabolism, Malate Dehydrogenase/metabolism, Models, Biological, Molecular Sequence Data, Multigene Family, Oligonucleotide Array Sequence Analysis, Open Reading Frames, Oxidative Stress, Plasmids/metabolism, RNA/chemistry, Sequence Analysis, DNA, Transcription, Genetic, Tricarboxylic Acids/metabolism, Zymomonas/*genetics | Genetics | Metabolism |
| 16232532 | Investigation of the utility of pineapple juice and pineapple waste material as low-cost substrate for ethanol fermentation by Zymomonas mobilis. | Tanaka K, Hilary ZD, Ishizaki A | J Biosci Bioeng | 10.1016/s1389-1723(99)80128-5 | 1999 | |||
| 16403876 | Polyphasic study of Zymomonas mobilis strains revealing the existence of a novel subspecies Z. mobilis subsp. francensis subsp. nov., isolated from French cider. | Coton M, Laplace JM, Auffray Y, Coton E | Int J Syst Evol Microbiol | 10.1099/ijs.0.63732-0 | 2006 | Alcoholic Beverages/*microbiology, Bacterial Proteins/genetics, Chaperonin 60/genetics, DNA Gyrase/genetics, DNA, Intergenic/genetics, *Food Microbiology, France, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Zymomonas/chemistry/*classification/isolation & purification/physiology | Phylogeny | Biotechnology |
| 18546408 | Ethanol production by immobilized Saccharomyces cerevisiae, Saccharomyces uvarum, and Zymomonas mobilis. | McGhee JE, Julian GS, Detroy RW, Bothast RJ | Biotechnol Bioeng | 10.1002/bit.260240512 | 1982 | Biotechnology | ||
| 18592556 | Immobilized cell biocatalyst activation and pseudo-steady-state behavior: model and experiment. | Monbouquette HG, Sayles GD, Ollis DF | Biotechnol Bioeng | 10.1002/bit.260350608 | 1990 | |||
| 18597261 | A structured kinetic model for Zymomonas mobilis ATCC10988. | Veeramallu U, Agrawal P | Biotechnol Bioeng | 10.1002/bit.260360707 | 1990 | |||
| 21725006 | Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988. | Pappas KM, Kouvelis VN, Saunders E, Brettin TS, Bruce D, Detter C, Balakireva M, Han CS, Savvakis G, Kyrpides NC, Typas MA | J Bacteriol | 10.1128/JB.05395-11 | 2011 | Agave/microbiology, DNA, Bacterial/*chemistry/*genetics, Ethanol/metabolism, Fermentation, Food Microbiology, *Genome, Bacterial, Mexico, Molecular Sequence Data, Plasmids, *Sequence Analysis, DNA, Sucrose/metabolism, Zymomonas/*genetics/isolation & purification/metabolism/physiology | Genetics | Metabolism |
| 24629064 | pZMO7-Derived shuttle vectors for heterologous protein expression and proteomic applications in the ethanol-producing bacterium Zymomonas mobilis. | So LY, Chen WY, Lacap-Bugler DC, Seemann M, Watt RM | BMC Microbiol | 10.1186/1471-2180-14-68 | 2014 | Escherichia coli/genetics, Ethanol/*metabolism, *Gene Expression, *Genetic Vectors, Genetics, Microbial/*methods, Genomic Instability, Protein Binding, Protein Interaction Mapping, Proteomics/*methods, Zymomonas/*genetics/*metabolism | Metabolism | |
| 26883123 | Reconstruction of a charge balanced genome-scale metabolic model to study the energy-uncoupled growth of Zymomonas mobilis ZM1. | Motamedian E, Saeidi M, Shojaosadati SA | Mol Biosyst | 10.1039/c5mb00588d | 2016 | Adenosine Triphosphatases/metabolism, Algorithms, Computer Simulation, Ethanol/metabolism, Fermentation, *Genome-Wide Association Study, Glucose/metabolism, *Metabolome, *Metabolomics/methods, *Models, Biological, Oxygen Consumption, Proton-Translocating ATPases/metabolism, Reproducibility of Results, Zymomonas/*genetics/*metabolism | Metabolism | Genetics |
| 29694430 | Genome comparison of different Zymomonas mobilis strains provides insights on conservation of the evolution. | Chen C, Wu L, Cao Q, Shao H, Li X, Zhang Y, Wang H, Tan X | PLoS One | 10.1371/journal.pone.0195994 | 2018 | Ethanol/metabolism, Evolution, Molecular, Genome Size, *Genome, Bacterial, Hydrogen-Ion Concentration, Phylogeny, Sequence Analysis, DNA/*methods, Zymomonas/*classification/genetics/metabolism | Genetics | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24624 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12496 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12496) | |
| 91125 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID13909.1 |