Strain identifier
BacDive ID: 132682
Type strain:
Species: Allofrancisella inopinata
Strain history: <- W.-J. Li, Sun Yat-Sen University, Guangzhou, China <- P.-H. Qu, Guangdong Provincial Hospital; SYSU YG23
NCBI tax ID(s): 1085647 (species)
General
@ref: 24471
BacDive-ID: 132682
DSM-Number: 101834
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, coccus-shaped
description: Allofrancisella inopinata DSM 101834 is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from water of a cooling tower.
NCBI tax id
- NCBI tax id: 1085647
- Matching level: species
strain history
- @ref: 24471
- history: <- W.-J. Li, Sun Yat-Sen University, Guangzhou, China <- P.-H. Qu, Guangdong Provincial Hospital; SYSU YG23
doi: 10.13145/bacdive132682.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Francisellaceae
- genus: Allofrancisella
- species: Allofrancisella inopinata
- full scientific name: Allofrancisella inopinata Qu et al. 2016
@ref: 24471
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Thiotrichales
family: Francisellaceae
genus: Allofrancisella
species: Allofrancisella inopinata
full scientific name: Allofrancisella inopinata Qu et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 25033
- gram stain: negative
- cell shape: coccus-shaped
- motility: no
Culture and growth conditions
culture medium
- @ref: 24471
- name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/429c
- composition: Name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c) Composition: Horse blood 40.0 g/l Sheep blood 40.0 g/l Glucose 10.0 g/l Cysteine 1.0 g/l Columbia agar base
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
25033 | positive | growth | 18-37 | |
25033 | positive | optimum | 32 | mesophilic |
24471 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 25033
- oxygen tolerance: aerobe
spore formation
- @ref: 25033
- spore formation: no
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
25033 | 4853 | esculin | - | hydrolysis |
25033 | 5291 | gelatin | - | hydrolysis |
25033 | 17306 | maltose | - | fermentation |
25033 | 17632 | nitrate | - | reduction |
25033 | 16634 | raffinose | - | fermentation |
25033 | 17992 | sucrose | - | fermentation |
25033 | 27897 | tryptophan | - | energy source |
25033 | 15824 | D-fructose | + | fermentation |
25033 | 17634 | D-glucose | + | fermentation |
25033 | 16024 | D-mannose | + | fermentation |
25033 | 17561 | L-cysteine | + | growth |
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 15824 | D-fructose | + | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | is resistant |
---|---|---|---|---|---|
25033 | 17698 | chloramphenicol | yes | yes | |
25033 | 23066 | cephalosporin | yes | yes | |
25033 | 100241 | ciprofloxacin | yes | yes | |
25033 | 50845 | doxycycline | yes | yes | |
25033 | 17833 | gentamicin | yes | yes | |
25033 | 63598 | levofloxacin | yes | yes | |
25033 | 27902 | tetracycline | yes | yes |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
25033 | 15688 | acetoin | no |
25033 | 35581 | indole | no |
68377 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
25033 | 15688 | acetoin | - | |
25033 | 35581 | indole | - | |
68377 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
25033 | 6-phospho-beta-galactosidase | - | 3.2.1.85 |
25033 | acid phosphatase | + | 3.1.3.2 |
25033 | alanine arylamidase | - | 3.4.11.2 |
25033 | alkaline phosphatase | + | 3.1.3.1 |
25033 | alpha-arabinosidase | - | 3.2.1.55 |
25033 | alpha-chymotrypsin | - | 3.4.21.1 |
25033 | alpha-fucosidase | - | 3.2.1.51 |
25033 | alpha-galactosidase | - | 3.2.1.22 |
25033 | alpha-glucosidase | - | 3.2.1.20 |
25033 | alpha-mannosidase | - | 3.2.1.24 |
25033 | arginine arylamidase | + | |
25033 | arginine dihydrolase | - | 3.5.3.6 |
25033 | beta-galactosidase | - | 3.2.1.23 |
25033 | beta-glucosidase | - | 3.2.1.21 |
25033 | beta-glucuronidase | - | 3.2.1.31 |
25033 | catalase | + | 1.11.1.6 |
25033 | cystine arylamidase | - | 3.4.11.3 |
25033 | cytochrome oxidase | - | 1.9.3.1 |
25033 | esterase (C 4) | + | |
25033 | esterase lipase (C 8) | + | |
25033 | glutamyl-glutamate arylamidase | - | |
25033 | glycin arylamidase | - | |
25033 | histidine arylamidase | - | |
25033 | leucine arylamidase | + | 3.4.11.1 |
25033 | leucyl glycin arylamidase | - | 3.4.11.1 |
25033 | lipase (C 14) | - | |
25033 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
25033 | naphthol-AS-BI-phosphohydrolase | + | |
25033 | ornithine decarboxylase | + | 4.1.1.17 |
25033 | phenylalanine arylamidase | + | |
25033 | phenylalanine arylamidase | - | |
25033 | proline-arylamidase | - | 3.4.11.5 |
25033 | pyroglutamic acid arylamidase | - | |
25033 | serine arylamidase | - | |
25033 | trypsin | - | 3.4.21.4 |
25033 | tryptophan deaminase | - | 4.1.99.1 |
25033 | tyrosine arylamidase | - | |
25033 | urease | - | 3.5.1.5 |
25033 | valine arylamidase | - | |
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | beta-galactosidase | - | 3.2.1.23 |
68377 | alkaline phosphatase | - | 3.1.3.1 |
68377 | lipase | + | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68377 | beta-lactamase | - | 3.5.2.6 |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24471 | - | + | + | + | + | - | - | + | - | - | - | - | - |
24471 | - | + | + | - | +/- | - | - | + | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 24471
- sample type: water of a cooling tower
- geographic location: Guangzhou city
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Cooling tower |
#Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_4694.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_68;96_1442;97_1720;98_2103;99_4694&stattab=map
- Last taxonomy: Allofrancisella
- 16S sequence: JN620412
- Sequence Identity:
- Total samples: 241
- soil counts: 10
- aquatic counts: 220
- animal counts: 11
Safety information
risk assessment
- @ref: 24471
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24471
- description: Allofrancisella inopinata strain SYSU YG23 16S ribosomal RNA gene, partial sequence
- accession: JN620412
- length: 1452
- database: ena
- NCBI tax ID: 1085647
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Allofrancisella inopinata DSM 101834 | GCA_004365555 | scaffold | ncbi | 1085647 |
66792 | Allofrancisella inopinata strain DSM 101834 | 1085647.3 | wgs | patric | 1085647 |
66792 | Allofrancisella inopinata strain SYSU YG23 | 1085647.4 | complete | patric | 1085647 |
66792 | Allofrancisella inopinata DSM 101834 | 2784746783 | draft | img | 1085647 |
GC content
- @ref: 24471
- GC-content: 32.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 90.446 | yes |
flagellated | no | 97.543 | no |
gram-positive | no | 96.433 | yes |
anaerobic | no | 98.003 | yes |
aerobic | no | 63.458 | yes |
halophile | no | 66.329 | no |
spore-forming | no | 97.39 | no |
thermophile | no | 97.883 | yes |
glucose-util | yes | 72.622 | no |
glucose-ferment | no | 51.16 | yes |
External links
@ref: 24471
culture collection no.: DSM 101834, KCTC 42968, SYSU YG23
straininfo link
- @ref: 90990
- straininfo: 403532
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27543089 | Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov. | Qu PH, Li Y, Salam N, Chen SY, Liu L, Gu Q, Fang BZ, Xiao M, Li M, Chen C, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001437 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Francisella, Gammaproteobacteria/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, *Water Microbiology, *Water Supply | Transcriptome |
Genetics | 33239460 | Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China. | Ohrman C, Uneklint I, Karlsson L, Svensson D, Forsman M, Sjodin A | Microbiol Resour Announc | 10.1128/MRA.00554-20 | 2020 | Phylogeny |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24471 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101834 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101834) | |||
25033 | P. H. L. Qu, Y.,Salam, N.,Chen, S. Y.,Liu, L.,Gu, Q.,Fang, B. Z.,Xiao, M.,Li, M.,Chen, C.,Li, W. J. | Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov | 10.1099/ijsem.0.001437 | IJSEM 66: 4832-4838 2016 | 27543089 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
68377 | Automatically annotated from API NH | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
90990 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403532.1 |