Name: Allofrancisella inopinata DSM 101834
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132682

Type strain:

Species: Allofrancisella inopinata

Culture col. no.: DSM 101834, KCTC 42968, SYSU YG23

Strain history: <- W.-J. Li, Sun Yat-Sen University, Guangzhou, China <- P.-H. Qu, Guangdong Provincial Hospital; SYSU YG23

NCBI tax ID(s): 1085647 (species)

SI-ID 403532

DSM 101834

Special Collections

Section

When using BacDive for research please cite our paper

Allofrancisella inopinata DSM 101834 is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from water of a cooling tower.

coccus-shaped
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Francisellaceae*
	Genus	*Allofrancisella*
	Species	**Allofrancisella inopinata**
	Full Scientific Name (LPSN)	Allofrancisella inopinata Qu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25033]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97
[Ref.: #125439]	Gram stain	negative Confidence in %98.9

[Ref.: #25033]	Cell shape	coccus-shaped

[Ref.: #25033]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24471]

Culture medium

COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)

[Ref.: #24471]

Culture medium growth

[Ref.: #24471]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24471]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24471]	growth	30 °C
[Ref.: #25033]	growth	18-37 °C
[Ref.: #25033]	optimum	32 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25033]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %93

[Ref.: #25033]	Ability of spore formation	no
[Ref.: #125438]	Ability of spore formation	no Confidence in %93.046
[Ref.: #125439]	Ability of spore formation	no Confidence in %97.3

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25033]	D-fructose ChEBI	+	fermentation
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #25033]	D-glucose ChEBI	+	fermentation
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #25033]	D-mannose ChEBI	+	fermentation
[Ref.: #25033]	esculin ChEBI	-	hydrolysis
[Ref.: #25033]	gelatin ChEBI	-	hydrolysis
[Ref.: #25033]	L-cysteine ChEBI	+	growth
[Ref.: #25033]	maltose ChEBI	-	fermentation
[Ref.: #25033]	nitrate ChEBI	-	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #25033]	raffinose ChEBI	-	fermentation
[Ref.: #25033]	sucrose ChEBI	-	fermentation
[Ref.: #25033]	tryptophan ChEBI	-	energy source
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25033]	cephalosporin ChEBI		yes
[Ref.: #25033]	chloramphenicol ChEBI	yes
[Ref.: #25033]	ciprofloxacin ChEBI	yes
[Ref.: #25033]	doxycycline ChEBI	yes
[Ref.: #25033]	gentamicin ChEBI	yes
[Ref.: #25033]	levofloxacin ChEBI	yes
[Ref.: #25033]	tetracycline ChEBI	yes

	Metabolite	Production
[Ref.: #25033]	acetoin ChEBI	no
[Ref.: #25033]	indole ChEBI	no
[Ref.: #68377]	indole ChEBI	no	* from API NH

	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #25033]	acetoin ChEBI	-
[Ref.: #25033]	indole ChEBI		-
[Ref.: #68377]	indole ChEBI		-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #25033]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #25033]	acid phosphatase	+	3.1.3.2
[Ref.: #25033]	alanine arylamidase	-	3.4.11.2
[Ref.: #25033]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #25033]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #25033]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25033]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25033]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25033]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25033]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25033]	arginine arylamidase	+
[Ref.: #25033]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25033]	beta-galactosidase	-	3.2.1.23
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #25033]	beta-glucosidase	-	3.2.1.21
[Ref.: #25033]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #25033]	catalase	+	1.11.1.6
[Ref.: #25033]	cystine arylamidase	-	3.4.11.3
[Ref.: #25033]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25033]	esterase (C 4)	+
[Ref.: #25033]	esterase lipase (C 8)	+
[Ref.: #68377]	gamma-glutamyltransferase	-	2.3.2.2	* from API NH
[Ref.: #25033]	glutamyl-glutamate arylamidase	-
[Ref.: #25033]	glycin arylamidase	-
[Ref.: #25033]	histidine arylamidase	-
[Ref.: #25033]	leucine arylamidase	+	3.4.11.1
[Ref.: #25033]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #68377]	lipase	+		* from API NH
[Ref.: #25033]	lipase (C 14)	-
[Ref.: #25033]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25033]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25033]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #25033]	phenylalanine arylamidase	+
[Ref.: #25033]	phenylalanine arylamidase	-
[Ref.: #25033]	proline-arylamidase	-	3.4.11.5
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #25033]	pyroglutamic acid arylamidase	-
[Ref.: #25033]	serine arylamidase	-
[Ref.: #25033]	trypsin	-	3.4.21.4
[Ref.: #25033]	tryptophan deaminase	-	4.1.99.1
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #25033]	tyrosine arylamidase	-
[Ref.: #25033]	urease	-	3.5.1.5
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH
[Ref.: #25033]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #24471]	6565	-	+	+	+	+	-	-	+	-	-	-	-	-
[Ref.: #24471]	6562	-	+	+	-	+/-	-	-	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24471]	Sample type/isolated from	water of a cooling tower
[Ref.: #24471]	Geographic location (country and/or sea, region)	Guangzhou city
[Ref.: #24471]	Country	China
[Ref.: #24471]	Country ISO 3 Code	CHN
[Ref.: #24471]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Cooling tower
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN620412 (>99% sequence identity) for Allofrancisella from Microbeatlas

Aquatic Samples	220
Soil Samples	10
Animal Samples	11
Plant Samples
Total Samples	241

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24471]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24471]	Allofrancisella inopinata strain SYSU YG23 16S ribosomal RNA gene, partial sequence	JN620412	1452	GenBank ENA	1085647 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allofrancisella inopinata DSM 101834	GCA_004365555	scaffold	GenBank ENA	1085647 tax ID	*
[Ref.: #66792]	Allofrancisella inopinata strain DSM 101834	1085647.3	wgs	PATRIC	1085647 tax ID	*
[Ref.: #66792]	Allofrancisella inopinata strain SYSU YG23	1085647.4	complete	PATRIC	1085647 tax ID	*
[Ref.: #66792]	Allofrancisella inopinata DSM 101834	2784746783	draft	JGI IMG/M	1085647 tax ID	*

[Ref.: #24471]

GC-content

32.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Allofrancisella inopinata strain SYSU YG23 PATRIC: 1085647.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.447	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	93.046	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	50.25	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.519	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	86.5	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allofrancisella inopinata strain SYSU YG23 PATRIC: 1085647.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	93
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	59.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.3

Availability in culture collections External links

[Ref.: #24471]

Culture collection no.

DSM 101834, KCTC 42968, SYSU YG23

[Ref.: #90990]

SI-ID 403532

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China.	Ohrman C, Uneklint I, Karlsson L, Svensson D, Forsman M, Sjodin A	Microbiol Resour Announc	10.1128/MRA.00554-20	2020	*
Phylogeny	Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov.	Qu PH, Li Y, Salam N, Chen SY, Liu L, Gu Q, Fang BZ, Xiao M, Li M, Chen C, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001437	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24471

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101834

#25033

P. H. L. Qu, Y.,Salam, N.,Chen, S. Y.,Liu, L.,Gu, Q.,Fang, B. Z.,Xiao, M.,Li, M.,Chen, C.,Li, W. J.: Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov. IJSEM 66: 4832 - 4838 2016 ( DOI 10.1099/ijsem.0.001437 , PubMed 27543089 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90990

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403532.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Allofrancisella inopinata strain SYSU YG23

Allofrancisella inopinata strain SYSU YG23

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