Allofrancisella inopinata (DSM 101834, KCTC 42968, SYSU YG23)

Name: Allofrancisella inopinata (DSM 101834, KCTC 42968, SYSU YG23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132682

Type strain

Culture col. no. DSM 101834 KCTC 42968 SYSU YG23

NCBI tax ID(s) 1085647

Special Collections DSMZ KCTC Literature strains

History <- W.-J. Li, Sun Yat-Sen University, Guangzhou, China <- P.-H. Qu, Guangdong Provincial Hospital; SYSU YG23

Links

Allofrancisella inopinata DSM 101834 is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from water of a cooling tower.

Gram-negative coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403532

KCTC 42968,DSM 101834

@ref 20215

Last LPSN update 2026-02-09 11:31:46

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Beggiatoales

Family Francisellaceae

Genus Allofrancisella

Species Allofrancisella inopinata

Full scientific name Allofrancisella inopinata Qu et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
25033	negative	coccus-shaped
125438	negative		97
125439	negative		98.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24471	COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)		Medium recipe at MediaDive	Name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c) Composition: Horse blood 40.0 g/l Sheep blood 40.0 g/l Glucose 10.0 g/l Cysteine 1.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
24471	positive	growth	30
25033	positive	growth	18-37
25033	positive	optimum	32

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25033	aerobe
125439	obligate aerobe	93

Spore formation

@ref	Spore formation	Confidence
25033
125438		93.046
125439		97.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25033	15824 ChEBI	D-fructose	+	fermentation
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
25033	17634 ChEBI	D-glucose	+	fermentation
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
25033	16024 ChEBI	D-mannose	+	fermentation
25033	4853 ChEBI	esculin	-	hydrolysis
25033	5291 ChEBI	gelatin	-	hydrolysis
25033	17561 ChEBI	L-cysteine	+	growth
25033	17306 ChEBI	maltose	-	fermentation
25033	17632 ChEBI	nitrate	-	reduction
68377	18257 ChEBI	ornithine	-	degradation	from API NH
25033	16634 ChEBI	raffinose	-	fermentation
25033	17992 ChEBI	sucrose	-	fermentation
25033	27897 ChEBI	tryptophan	-	energy source
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Antibiotic resistance

@ref	ChEBI	Metabolite
25033	23066	cephalosporin
25033	17698	chloramphenicol
25033	100241	ciprofloxacin
25033	50845	doxycycline
25033	17833	gentamicin
25033	63598	levofloxacin
25033	27902	tetracycline

Metabolite production

@ref	Chebi-ID	Metabolite
25033	15688 ChEBI	acetoin
25033	35581 ChEBI	indole
68377	35581 ChEBI	indole	from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test
25033	15688 ChEBI	acetoin		-
25033	35581 ChEBI	indole	-
68377	35581 ChEBI	indole	-		from API NH

Enzymes

@ref	Value	Activity	Ec
25033	6-phospho-beta-galactosidase	-	3.2.1.85
25033	acid phosphatase	+	3.1.3.2
25033	alanine arylamidase	-	3.4.11.2
25033	alkaline phosphatase	+	3.1.3.1
68377	alkaline phosphatase	-	3.1.3.1	from API NH
25033	alpha-arabinosidase	-	3.2.1.55
25033	alpha-chymotrypsin	-	3.4.21.1
25033	alpha-fucosidase	-	3.2.1.51
25033	alpha-galactosidase	-	3.2.1.22
25033	alpha-glucosidase	-	3.2.1.20
25033	alpha-mannosidase	-	3.2.1.24
25033	arginine arylamidase	+
25033	arginine dihydrolase	-	3.5.3.6
25033	beta-galactosidase	-	3.2.1.23
68377	beta-galactosidase	-	3.2.1.23	from API NH
25033	beta-glucosidase	-	3.2.1.21
25033	beta-glucuronidase	-	3.2.1.31
68377	beta-lactamase	-	3.5.2.6	from API NH
25033	catalase	+	1.11.1.6
25033	cystine arylamidase	-	3.4.11.3
25033	cytochrome oxidase	-	1.9.3.1
25033	esterase (C 4)	+
25033	esterase lipase (C 8)	+
68377	gamma-glutamyltransferase	-	2.3.2.2	from API NH
25033	glutamyl-glutamate arylamidase	-
25033	glycin arylamidase	-
25033	histidine arylamidase	-
25033	leucine arylamidase	+	3.4.11.1
25033	leucyl glycin arylamidase	-	3.4.11.1
68377	lipase	+		from API NH
25033	lipase (C 14)	-
25033	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25033	naphthol-AS-BI-phosphohydrolase	+
25033	ornithine decarboxylase	+	4.1.1.17
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
25033	phenylalanine arylamidase	+
25033	phenylalanine arylamidase	-
25033	proline-arylamidase	-	3.4.11.5
68377	proline-arylamidase	-	3.4.11.5	from API NH
25033	pyroglutamic acid arylamidase	-
25033	serine arylamidase	-
25033	trypsin	-	3.4.21.4
25033	tryptophan deaminase	-	4.1.99.1
68377	tryptophan deaminase	-	4.1.99.1	from API NH
25033	tyrosine arylamidase	-
25033	urease	-	3.5.1.5
68377	urease	-	3.5.1.5	from API NH
25033	valine arylamidase	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
24471	-	+	+	+	+	-	-	+	-	-	-	-	-
24471	-	+	+	-	+/-	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Cooling tower
#Environmental	#Aquatic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24471	water of a cooling tower	Guangzhou city	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JN620412 (>99% sequence identity) for Allofrancisella from Microbeatlas

Aquatic Samples	220
Soil Samples	10
Animal Samples	11
Plant Samples
Total Samples	241

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24471	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1222296v1 assembly for Allofrancisella inopinata SYSU YG23	complete	GCA_012222965	1085647.4	8063359560	1085647	93.36
66792	ASM436555v1 assembly for Allofrancisella inopinata DSM 101834	scaffold	GCA_004365555	1085647.3	2784746783	1085647	64.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24471	Allofrancisella inopinata strain SYSU YG23 16S ribosomal RNA gene, partial sequence	JN620412	1452		1085647

GC content

@ref	GC-content (mol%)	Method
24471	32.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allofrancisella inopinata strain SYSU YG23
PATRIC: 1085647.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.00	no
125439	gram_stain	BacteriaNetⓘ	negative	98.90	no
125439	motility	BacteriaNetⓘ	no	59.30	no
125439	spore_formation	BacteriaNetⓘ	no	97.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Allofrancisella inopinata strain SYSU YG23
PATRIC: 1085647.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	93.45	yes
125438	spore-forming	spore-formingⓘ	no	93.05	yes
125438	aerobic	aerobicⓘ	no	50.25	no
125438	thermophilic	thermophileⓘ	no	95.52	yes
125438	flagellated	motile2+ⓘ	no	86.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reorganized Genomic Taxonomy of Francisellaceae Enables Design of Robust Environmental PCR Assays for Detection of Francisella tularensis.	Ohrman C, Sahl JW, Sjodin A, Uneklint I, Ballard R, Karlsson L, McDonough RF, Sundell D, Soria K, Backman S, Chase K, Brindefalk B, Sozhamannan S, Vallesi A, Hagglund E, Ramirez-Paredes JG, Thelaus J, Colquhoun D, Myrtennas K, Birdsell D, Johansson A, Wagner DM, Forsman M.	Microorganisms	10.3390/microorganisms9010146	2021
Genetics	Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China.	Ohrman C, Uneklint I, Karlsson L, Svensson D, Forsman M, Sjodin A	Microbiol Resour Announc	10.1128/MRA.00554-20	2020
Phylogeny	Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov.	Qu PH, Li Y, Salam N, Chen SY, Liu L, Gu Q, Fang BZ, Xiao M, Li M, Chen C, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001437	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24471	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101834
#25033	P. H. L. Qu, Y.,Salam, N.,Chen, S. Y.,Liu, L.,Gu, Q.,Fang, B. Z.,Xiao, M.,Li, M.,Chen, C.,Li, W. J.: Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov. IJSEM 66: 4832 - 4838 2016 ( DOI 10.1099/ijsem.0.001437 , PubMed 27543089 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Allofrancisella inopinata (DSM 101834, KCTC 42968, SYSU YG23)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_012222965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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