Strain identifier

BacDive ID: 132660

Type strain: Yes

Species: Microbacterium faecale

Strain history: <- W.-J. Li <- X. Chen, Yunnan Institute of Microbiology, Yunnan University, Kunming, China; YIM 101168

NCBI tax ID(s): 1804630 (species)

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General

@ref: 24449

BacDive-ID: 132660

DSM-Number: 27232

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive

description: Microbacterium faecale DSM 27232 is an aerobe, Gram-positive bacterium that was isolated from dove faeces, Columba livia.

NCBI tax id

  • NCBI tax id: 1804630
  • Matching level: species

strain history

  • @ref: 24449
  • history: <- W.-J. Li <- X. Chen, Yunnan Institute of Microbiology, Yunnan University, Kunming, China; YIM 101168

doi: 10.13145/bacdive132660.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium faecale
  • full scientific name: Microbacterium faecale Chen et al. 2016

@ref: 24449

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium faecale

full scientific name: Microbacterium faecale Chen et al. 2016

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilitycell shapeconfidence
24965positive0.7 µm0.5 µmno
24965positive0.7 µm0.5 µmnorod-shaped
69480no93.847
69480positive100

colony morphology

  • @ref: 24965
  • colony size: 0.5-3.0 mm
  • colony color: yellow
  • medium used: ISP2

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24965ISP2yes
24449TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24965positivegrowth7-37
24449positivegrowth28mesophilic

culture pH

  • @ref: 24965
  • ability: positive
  • type: growth
  • pH: 6.0-10.0
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 24965
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
24965no
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
24965NaClpositivegrowth0-13 %(w/v)
24965NaClpositivegrowth0-13.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2496517128adipate-assimilation
24965casein-hydrolysis
2496562968cellulose-hydrolysis
2496516947citrate-assimilation
2496528053melibiose-assimilation
2496517924D-sorbitol-assimilation
2496527689decanoate-assimilation
2496517268myo-inositol-assimilation
2496516467L-arginine-hydrolysis
2496525115malate-assimilation
2496517632nitrate-reduction
2496518401phenylacetate-assimilation
2496528017starch-hydrolysis
2496517992sucrose-assimilation
2496527897tryptophan-energy source
2496553424tween 20-hydrolysis
2496553426tween 80-hydrolysis
2496516199urea-hydrolysis
2496527613amygdalin+assimilation
2496517634D-glucose+assimilation
2496517306maltose+assimilation
2496516899D-mannitol+assimilation
2496516024D-mannose+assimilation
249654853esculin+hydrolysis
249655291gelatin+hydrolysis
2496530849L-arabinose+assimilation
2496518019L-lysine+hydrolysis
2496515729L-ornithine+hydrolysis
2496562345L-rhamnose+assimilation
24965506227N-acetylglucosamine+assimilation
2496532032potassium gluconate+assimilation

metabolite production

@refChebi-IDmetaboliteproduction
2496535581indoleno
2496515688acetoinyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
2496515688acetoin+
2496535581indole-

enzymes

@refvalueactivityec
24965acid phosphatase+3.1.3.2
24965alkaline phosphatase+3.1.3.1
24965alpha-chymotrypsin-3.4.21.1
24965alpha-fucosidase-3.2.1.51
24965alpha-galactosidase+3.2.1.22
24965alpha-glucosidase+3.2.1.20
24965alpha-mannosidase-3.2.1.24
24965beta-galactosidase+3.2.1.23
24965beta-glucosidase+3.2.1.21
24965beta-glucuronidase+3.2.1.31
24965catalase+1.11.1.6
24965cystine arylamidase+3.4.11.3
24965cytochrome oxidase-1.9.3.1
24965esterase (C 4)+
24965esterase lipase (C 8)+
24965leucine arylamidase+3.4.11.1
24965lipase (C 14)-
24965N-acetyl-beta-glucosaminidase+3.2.1.52
24965naphthol-AS-BI-phosphohydrolase+
24965trypsin-3.4.21.4
24965tryptophan deaminase-4.1.99.1
24965valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentenrichment culture durationenrichment culture temperature
24449dove faeces, Columba liviaColumba liviaYunnan Province, Yunnan Wild Animal ParkChinaCHNAsia
249657 days28

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 24449
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24449
  • description: Microbacterium faecale strain YIM 101168 16S ribosomal RNA gene, partial sequence
  • accession: KT756666
  • length: 1519
  • database: ena
  • NCBI tax ID: 1804630

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbacterium faecale CGMCC 1.15152GCA_014640975scaffoldncbi1804630
66792Microbacterium faecale strain CGMCC 1.151521804630.3wgspatric1804630

GC content

  • @ref: 24449
  • GC-content: 69.7
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno97.242yes
gram-positiveyes95.536no
anaerobicno99.451no
aerobicyes89.82yes
halophileno57.801no
spore-formingno93.719yes
glucose-utilyes86.165yes
thermophileno99.253yes
motileno94.217yes
glucose-fermentno84.902no

External links

@ref: 24449

culture collection no.: DSM 27232, CGMCC 1.15152, KCTC 39554, YIM 101168

straininfo link

  • @ref: 90971
  • straininfo: 400012

literature

  • topic: Phylogeny
  • Pubmed-ID: 27498962
  • title: Microbacterium faecale sp. nov., isolated from the faeces of Columba livia.
  • authors: Chen X, Li GD, Li QY, Xu FJ, Jiang CL, Han L, Huang XS, Jiang Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001372
  • year: 2016
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Amino Acids/chemistry, Animals, Bacterial Typing Techniques, Base Composition, China, Columbidae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Glycolipids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24449Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27232Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27232)
24965X. L. Chen, Gui-Ding,Li, Qin-Yuan,Xu, Fang-Ji,Jiang, Cheng-Lin,Han, Li,Huang, Xue-Shi,Jiang, YiMicrobacterium faecale sp. nov., isolated from the faeces of Columba livia10.1099/ijsem.0.001372IJSEM 66: 4445-4450 201627498962
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90971Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400012.1