Name: Microbacterium faecale DSM 27232
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132660

Type strain:

Species: Microbacterium faecale

Culture col. no.: DSM 27232, CGMCC 1.15152, KCTC 39554, YIM 101168

Strain history: <- W.-J. Li <- X. Chen, Yunnan Institute of Microbiology, Yunnan University, Kunming, China; YIM 101168

NCBI tax ID(s): 1804630 (species)

SI-ID 400012

DSM 27232

Section

Microbacterium faecale DSM 27232 is an aerobe, Gram-positive bacterium that was isolated from dove faeces, Columba livia.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium faecale**
	Full Scientific Name (LPSN)	Microbacterium faecale Chen et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24965]	Gram stain	positive
[Ref.: #24965]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #24965]	Cell length	0.7 µm
[Ref.: #24965]	Cell length	0.7 µm

[Ref.: #24965]	Cell width	0.5 µm
[Ref.: #24965]	Cell width	0.5 µm

[Ref.: #24965]	Motility	no
[Ref.: #24965]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.847

[Ref.: #24965]	Cell shape	rod-shaped

[Ref.: #24965]	Colony size	0.5-3.0 mm
[Ref.: #24965]	Colony color	yellow
[Ref.: #24965]	Cultivation medium used	ISP2

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP2

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Culture medium growth

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24449]			growth	28 °C
[Ref.: #24965]			growth	7-37 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #24965]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24965]

Oxygen tolerance

aerobe

[Ref.: #24965]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24965]		NaCl		growth	0-13	%(w/v)
[Ref.: #24965]		NaCl		growth	0-13.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24965]	adipate ChEBI	-	assimilation
[Ref.: #24965]	amygdalin ChEBI	+	assimilation
[Ref.: #24965]	casein	-	hydrolysis
[Ref.: #24965]	cellulose ChEBI	-	hydrolysis
[Ref.: #24965]	citrate ChEBI	-	assimilation
[Ref.: #24965]	D-glucose ChEBI	+	assimilation
[Ref.: #24965]	D-mannitol ChEBI	+	assimilation
[Ref.: #24965]	D-mannose ChEBI	+	assimilation
[Ref.: #24965]	D-sorbitol ChEBI	-	assimilation
[Ref.: #24965]	decanoate ChEBI	-	assimilation
[Ref.: #24965]	esculin ChEBI	+	hydrolysis
[Ref.: #24965]	gelatin ChEBI	+	hydrolysis
[Ref.: #24965]	L-arabinose ChEBI	+	assimilation
[Ref.: #24965]	L-arginine ChEBI	-	hydrolysis
[Ref.: #24965]	L-lysine ChEBI	+	hydrolysis
[Ref.: #24965]	L-ornithine ChEBI	+	hydrolysis
[Ref.: #24965]	L-rhamnose ChEBI	+	assimilation
[Ref.: #24965]	malate ChEBI	-	assimilation
[Ref.: #24965]	maltose ChEBI	+	assimilation
[Ref.: #24965]	melibiose ChEBI	-	assimilation
[Ref.: #24965]	myo-inositol ChEBI	-	assimilation
[Ref.: #24965]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #24965]	nitrate ChEBI	-	reduction
[Ref.: #24965]	phenylacetate ChEBI	-	assimilation
[Ref.: #24965]	potassium gluconate ChEBI	+	assimilation
[Ref.: #24965]	starch ChEBI	-	hydrolysis
[Ref.: #24965]	sucrose ChEBI	-	assimilation
[Ref.: #24965]	tryptophan ChEBI	-	energy source
[Ref.: #24965]	tween 20 ChEBI	-	hydrolysis
[Ref.: #24965]	tween 80 ChEBI	-	hydrolysis
[Ref.: #24965]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24965]		acetoin ChEBI	yes
[Ref.: #24965]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #24965]		acetoin ChEBI	+
[Ref.: #24965]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #24965]	acid phosphatase	+	3.1.3.2
[Ref.: #24965]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24965]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24965]	alpha-fucosidase	-	3.2.1.51
[Ref.: #24965]	alpha-galactosidase	+	3.2.1.22
[Ref.: #24965]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24965]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24965]	beta-galactosidase	+	3.2.1.23
[Ref.: #24965]	beta-glucosidase	+	3.2.1.21
[Ref.: #24965]	beta-glucuronidase	+	3.2.1.31
[Ref.: #24965]	catalase	+	1.11.1.6
[Ref.: #24965]	cystine arylamidase	+	3.4.11.3
[Ref.: #24965]	cytochrome oxidase	-	1.9.3.1
[Ref.: #24965]	esterase (C 4)	+
[Ref.: #24965]	esterase lipase (C 8)	+
[Ref.: #24965]	leucine arylamidase	+	3.4.11.1
[Ref.: #24965]	lipase (C 14)	-
[Ref.: #24965]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #24965]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24965]	trypsin	-	3.4.21.4
[Ref.: #24965]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24965]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24449]	Sample type/isolated from	dove faeces, Columba livia
[Ref.: #24449]	Host species	Columba livia
[Ref.: #24449]	Geographic location (country and/or sea, region)	Yunnan Province, Yunnan Wild Animal Park
[Ref.: #24449]	Country	China
[Ref.: #24449]	Country ISO 3 Code	CHN
[Ref.: #24449]	Continent	Asia

[Ref.: #24965]	Enrichment culture duration	7 days
[Ref.: #24965]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24449]	Microbacterium faecale strain YIM 101168 16S ribosomal RNA gene, partial sequence	KT756666	1519	ENA	1804630 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium faecale CGMCC 1.15152	GCA_014640975	scaffold	GenBank	1804630 tax ID	*
[Ref.: #66792]	Microbacterium faecale strain CGMCC 1.15152	1804630.3	wgs	PATRIC	1804630 tax ID	*

[Ref.: #24449]

GC-content

69.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium faecale CGMCC 1.15152 NCBI: GCA_014640975.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium faecale CGMCC 1.15152 NCBI: GCA_014640975.1
[Ref.: #69480]	flagellated	no	97.242	yes
[Ref.: #69480]	gram-positive	yes	95.536	no
[Ref.: #69480]	anaerobic	no	99.451	no
[Ref.: #69480]	aerobic	yes	89.82	yes
[Ref.: #69480]	halophile	no	57.801	no
[Ref.: #69480]	spore-forming	no	93.719	yes
[Ref.: #69480]	glucose-util	yes	86.165	yes
[Ref.: #69480]	thermophile	no	99.253	yes
[Ref.: #69480]	motile	no	94.217	yes
[Ref.: #69480]	glucose-ferment	no	84.902	no

Availability in culture collections External links

[Ref.: #24449]

Culture collection no.

DSM 27232, CGMCC 1.15152, KCTC 39554, YIM 101168

[Ref.: #90971]

SI-ID 400012

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium faecale sp. nov., isolated from the faeces of Columba livia.	Chen X, Li GD, Li QY, Xu FJ, Jiang CL, Han L, Huang XS, Jiang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001372	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24449

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27232

#24965

X. L. Chen, Gui-Ding,Li, Qin-Yuan,Xu, Fang-Ji,Jiang, Cheng-Lin,Han, Li,Huang, Xue-Shi,Jiang, Yi: Microbacterium faecale sp. nov., isolated from the faeces of Columba livia. IJSEM 66: 4445 - 4450 2016 ( DOI 10.1099/ijsem.0.001372 , PubMed 27498962 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90971

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400012.1 )

* These data were automatically processed and therefore are not curated

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Microbacterium faecale CGMCC 1.15152

Microbacterium faecale CGMCC 1.15152

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