Strain identifier
BacDive ID: 132522
Type strain: 
Species: Amycolatopsis deserti
Strain Designation: GY024, GYO24
Strain history: <- G. Y. A. Tan, University of Malaya, Kuala Lumpur; GY024
NCBI tax ID(s): 185696 (species)
version 9 (current version)
General
@ref: 24311
BacDive-ID: 132522
DSM-Number: 100106
keywords: 16S sequence, Bacteria
description: Amycolatopsis deserti GY024 is a bacterium that was isolated from arid composite soil.
NCBI tax id
- NCBI tax id: 185696
- Matching level: species
strain history
- @ref: 24311
- history: <- G. Y. A. Tan, University of Malaya, Kuala Lumpur; GY024
doi: 10.13145/bacdive132522.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Amycolatopsis
- species: Amycolatopsis deserti
- full scientific name: Amycolatopsis deserti Busarakam et al. 2017
@ref: 24311
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Amycolatopsis
species: Amycolatopsis deserti
full scientific name: Amycolatopsis deserti Busarakam et al. 2017
strain designation: GY024, GYO24
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24311
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 24311
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 24311
- sample type: arid composite soil
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Climate | #Hot | #Arid |
Safety information
risk assessment
- @ref: 24311
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24311
- description: Amycolatopsis deserti strain GY024 16S ribosomal RNA gene, partial sequence
- accession: AF453717
- length: 1430
- database: nuccore
- NCBI tax ID: 185696
GC content
- @ref: 24311
- GC-content: 70.1
- method: fluorimetric
External links
@ref: 24311
culture collection no.: DSM 100106, NCIMB 14972, NRRL B-65266
straininfo link
- @ref: 90848
- straininfo: 399950
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26809280 | Classification of thermophilic actinobacteria isolated from arid desert soils, including the description of Amycolatopsis deserti sp. nov. | Busarakam K, Brown R, Bull AT, Tan GY, Zucchi TD, da Silva LJ, de Souza WR, Goodfellow M | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0635-8 | 2016 | Actinomycetales/classification/genetics/*isolation & purification/metabolism, Australia, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Desert Climate, Hot Temperature, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil/chemistry, *Soil Microbiology | Stress |
| Phylogeny | 29383462 | Amycolatopsis cappadoca sp. nov., isolated from soil. | Isik K, Gencbay T, Topkara AR, Saricaoglu S, Saygin H, Ay H, Cetin D, Guven K, Sahin N | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1023-y | 2018 | Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Turkey | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24311 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100106 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100106) | |
| 90848 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399950.1 |