Strain identifier
BacDive ID: 132425
Type strain: 
Species: Proteus terrae
Strain Designation: N5/687
Strain history: <- U. Behrendt, Leibniz-Centre Agricultural Landscape Res. (ZALF), Müncheberg, Germany; N5/687
NCBI tax ID(s): 1574161 (species)
version 8.1 (current version)
General
@ref: 24214
BacDive-ID: 132425
DSM-Number: 29910
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Proteus terrae N5/687 is a mesophilic, motile bacterium that was isolated from fen peat soil of a nitrogen fertilization long-term experiment.
NCBI tax id
- NCBI tax id: 1574161
- Matching level: species
strain history
- @ref: 24214
- history: <- U. Behrendt, Leibniz-Centre Agricultural Landscape Res. (ZALF), Müncheberg, Germany; N5/687
doi: 10.13145/bacdive132425.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Morganellaceae
- genus: Proteus
- species: Proteus terrae
- full scientific name: Proteus terrae Behrendt et al. 2016
@ref: 24214
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Morganellaceae
genus: Proteus
species: Proteus terrae
full scientific name: Proteus terrae subsp. terrae (Behrendt et al. 2016) Behrendt et al. 2021
strain designation: N5/687
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.758 | |
| 69480 | 99.943 | negative |
Culture and growth conditions
culture medium
- @ref: 24214
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 24214
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.467 |
compound production
- @ref: 24214
- compound: nitrous oxide
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68368 | 30849 | L-arabinose | - | fermentation |
| 68368 | 27613 | amygdalin | - | fermentation |
| 68368 | 28053 | melibiose | - | fermentation |
| 68368 | 17992 | sucrose | + | fermentation |
| 68368 | 62345 | L-rhamnose | + | fermentation |
| 68368 | 30911 | sorbitol | - | fermentation |
| 68368 | 17268 | myo-inositol | - | fermentation |
| 68368 | 16899 | D-mannitol | - | fermentation |
| 68368 | 17634 | D-glucose | + | fermentation |
| 68368 | 5291 | gelatin | - | hydrolysis |
| 68368 | 27897 | tryptophan | + | energy source |
| 68368 | 16199 | urea | + | hydrolysis |
| 68368 | 16947 | citrate | - | assimilation |
| 68368 | 18257 | ornithine | - | degradation |
| 68368 | 25094 | lysine | - | degradation |
| 68368 | 29016 | arginine | - | hydrolysis |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 68368 | 15688 | acetoin | yes |
| 68368 | 35581 | indole | yes |
| 68368 | 16136 | hydrogen sulfide | yes |
metabolite tests
| @ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
|---|---|---|---|---|
| 68368 | 15688 | acetoin | + | |
| 68368 | 35581 | indole | + |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68368 | cytochrome oxidase | - | 1.9.3.1 |
| 68368 | gelatinase | - | |
| 68368 | tryptophan deaminase | + | 4.1.99.1 |
| 68368 | urease | + | 3.5.1.5 |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 |
| 68368 | lysine decarboxylase | - | 4.1.1.18 |
| 68368 | arginine dihydrolase | - | 3.5.3.6 |
| 68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
| @ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24214 | - | - | - | - | - | + | + | + | + | + | - | + | - | - | - | + | + | - | - | - | - |
| 24214 | - | - | - | - | - | + | + | + | + | + | - | + | - | - | - | + | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 24214
- sample type: fen peat soil of a nitrogen fertilization long-term experiment
- geographic location: Paulinenaue (52° 41' N, 12° 41' E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 52.6833
- longitude: 12.6833
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | |
| #Environmental | #Terrestrial | #Soil |
| #Environmental | #Terrestrial | #Wetland (Swamp) |
taxonmaps
- @ref: 69479
- File name: preview.99_739.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_12;97_12;98_14;99_739&stattab=map
- Last taxonomy: Proteus
- 16S sequence: LN680103
- Sequence Identity:
- Total samples: 89
- soil counts: 4
- aquatic counts: 10
- animal counts: 74
- plant counts: 1
Safety information
risk assessment
- @ref: 24214
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24214
- description: Proteus terrae partial 16S rRNA gene, type strain N5/687T
- accession: LN680103
- length: 1444
- database: ena
- NCBI tax ID: 1574161
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Proteus terrae LMG 28659 | GCA_003144325 | contig | ncbi | 1574161 |
| 66792 | Proteus terrae strain LMG 28659 | 1574161.3 | wgs | patric | 1574161 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.723 | no |
| gram-positive | no | 98.56 | no |
| anaerobic | no | 97.497 | no |
| aerobic | yes | 55.496 | no |
| halophile | no | 86.807 | no |
| spore-forming | no | 96.858 | no |
| glucose-util | yes | 90.04 | no |
| flagellated | yes | 75.358 | no |
| glucose-ferment | yes | 89.779 | yes |
| thermophile | no | 98.94 | no |
External links
@ref: 24214
culture collection no.: DSM 29910, LMG 28659
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26437638 | Taxonomic characterisation of Proteus terrae sp. nov., a N2O-producing, nitrate-ammonifying soil bacterium. | Behrendt U, Augustin J, Sproer C, Gelbrecht J, Schumann P, Ulrich A | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0601-5 | 2015 | Ammonia/*metabolism, Bacterial Typing Techniques, Carbon/metabolism, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Deinococcus, Molecular Sequence Data, Nitrates/*metabolism, Nitrogen/metabolism, Nitrous Oxide/*metabolism, Nucleic Acid Hybridization, Phylogeny, Proteus/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Metabolism |
| Phylogeny | 29297845 | Proteus columbae sp. nov., isolated from a pigeon in Ma'anshan, China. | Dai H, Wang Y, Fang Y, Xiao T, Huang Z, Kan B, Wang D | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002541 | 2018 | Animals, Bacterial Typing Techniques, Base Composition, China, Columbidae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, Proteus/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
| Enzymology | 35822812 | The Identification of Ethidium Bromide-Degrading Bacteria from Laboratory Gel Electrophoresis Waste. | Gandhi VP, Kesari KK, Kumar A | BioTech (Basel) | 10.3390/biotech11010004 | 2022 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24214 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29910 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29910) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68368 | Automatically annotated from API 20E | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |