Strain identifier

BacDive ID: 132293

Type strain: Yes

Species: Streptobacillus notomytis

Strain Designation: EF 12425

Strain history: CIP <- 2015, T. Eisenberg, LHL, Giessen, Germany: strain AHL 370-1

NCBI tax ID(s): 1712031 (species)

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General

@ref: 24082

BacDive-ID: 132293

DSM-Number: 100026

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Streptobacillus notomytis EF 12425 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from heart of an Australian spinifex hopping mouse Notomys alexis.

NCBI tax id

  • NCBI tax id: 1712031
  • Matching level: species

strain history

@refhistory
24082<- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; AHL 370-1 <- W. I. Hopkinson and J. M. Lloyd, Animal Health Lab., South Perth, Western Australia (Streptobacillus moniliformis)
121355CIP <- 2015, T. Eisenberg, LHL, Giessen, Germany: strain AHL 370-1

doi: 10.13145/bacdive132293.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Leptotrichiaceae
  • genus: Streptobacillus
  • species: Streptobacillus notomytis
  • full scientific name: Streptobacillus notomytis Eisenberg et al. 2015

@ref: 24082

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Leptotrichiaceae

genus: Streptobacillus

species: Streptobacillus notomytis

full scientific name: Streptobacillus notomytis Eisenberg et al. 2015

strain designation: EF 12425

type strain: yes

Morphology

cell morphology

  • @ref: 121355
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41886MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
24082COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
121355CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
41886positivegrowth37mesophilic
24082positivegrowth37mesophilic

Physiology and metabolism

enzymes

@refvalueactivityec
68382alkaline phosphatase-3.1.3.1
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45701C10:00.410
    45701C14:00.714
    45701C16:021.416
    45701C17:00.617
    45701C18:025.818
    45701C16:1 ω7c1.215.819
    45701C17:1 ω5c ISO116.461
    45701C18:1 ω9c15.217.769
    45701C18:2 ω6,9c/C18:0 ANTE33.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
24082--+/-+/--+/---------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentgeographic locationisolation date
24082heart of an Australian spinifex hopping mouse Notomys alexisNotomys alexisAustraliaAUSAustralia and Oceania
45701Hopping mice heartAustraliaAUSAustralia and OceaniaSouth Perth
121355Animal, Septicaemia of spinifex hopping mouse, Notomys alexisAustraliaAUSAustralia and Oceania1979-01-02

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Rodentia (Other)
#Host Body-Site#Organ#Heart

taxonmaps

  • @ref: 69479
  • File name: preview.99_4085.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_350;96_1482;97_1770;98_2164;99_4085&stattab=map
  • Last taxonomy: Streptobacillus notomytis
  • 16S sequence: KR001919
  • Sequence Identity:
  • Total samples: 1018
  • soil counts: 1
  • aquatic counts: 601
  • animal counts: 410
  • plant counts: 6

Safety information

risk assessment

  • @ref: 121355
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
24082Streptobacillus notomytis mRNA for 16S ribosomal rRNA, type strain AHL 370-1TZ353041485ena1712031
24082Streptobacillus notomytis strain AHL 370-1 16S ribosomal RNA gene, partial sequenceKR0019191481ena1712031

GC content

  • @ref: 24082
  • GC-content: 28.1

External links

@ref: 24082

culture collection no.: DSM 100026, CCM 8593, CCUG 12425, AHL 370-1, CIP 110949

straininfo link

  • @ref: 90640
  • straininfo: 57390

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26438009Streptobacillus notomytis sp. nov., isolated from a spinifex hopping mouse (Notomys alexis Thomas, 1922), and emended description of Streptobacillus Levaditi et al. 1925, Eisenberg et al. 2015 emend.Eisenberg T, Glaeser SP, Ewers C, Semmler T, Nicklas W, Rau J, Mauder N, Hofmann N, Imaoka K, Kimura M, Kampfer PInt J Syst Evol Microbiol10.1099/ijsem.0.0006542015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Heart/microbiology, Japan, Molecular Sequence Data, Murinae/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rats, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purification, Western AustraliaGenetics
Phylogeny26813893Caviibacter abscessus gen. nov., sp. nov., a member of the family Leptotrichiaceae isolated from guinea pigs (Cavia porcellus).Eisenberg T, Glaeser SP, Ewers C, Semmler T, Drescher B, Kampfer PInt J Syst Evol Microbiol10.1099/ijsem.0.0009222016Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Germany, Guinea Pigs/*microbiology, Lymph Nodes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny27031261Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer RInt J Syst Evol Microbiol10.1099/ijsem.0.0010502016Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Ireland, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24082Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100026Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100026)
41886Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34556
45701Curators of the CCUGhttps://www.ccug.se/strain?id=12425Culture Collection University of Gothenburg (CCUG) (CCUG 12425)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90640Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID57390.1
121355Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110949Collection of Institut Pasteur (CIP 110949)