Name: Streptobacillus notomytis EF 12425
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132293

Type strain:

Species: Streptobacillus notomytis

Strain Designation: EF 12425

Culture col. no.: DSM 100026, CCM 8593, CCUG 12425, AHL 370-1, CIP 110949

Strain history: CIP <- 2015, T. Eisenberg, LHL, Giessen, Germany: strain AHL 370-1

NCBI tax ID(s): 1712031 (species)

SI-ID 57390

CCUG 12425, DSM 100026

Other strains from Streptobacillus notomytis

S. notomytis KWG24, DSM 101563

Section

Streptobacillus notomytis EF 12425 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from heart of an Australian spinifex hopping mouse Notomys alexis.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Leptotrichiaceae*
	Genus	*Streptobacillus*
	Species	**Streptobacillus notomytis**
	Full Scientific Name (LPSN)	Streptobacillus notomytis Eisenberg et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #121355]	Gram stain	negative
[Ref.: #121355]	Cell shape	rod-shaped
[Ref.: #121355]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41886]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #41886]

Culture medium growth

[Ref.: #41886]

Culture medium composition

expand / minimize

[Ref.: #24082]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #24082]

Culture medium growth

[Ref.: #24082]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24082]

Culture medium composition

expand / minimize

[Ref.: #121355]

Culture medium

CIP Medium 45

[Ref.: #121355]

Culture medium growth

[Ref.: #121355]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #24082]			growth	37 °C
[Ref.: #41886]			growth	37 °C

[Ref.: #24082]	Temperature range	mesophilic
[Ref.: #41886]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #45701]

Fatty acid	Percentage	ECL
C18:2 ω6,9c/C18:0 ANTE	33.6	17.724
C18:0	25.8	18
C16:0	21.4	16
C18:1 ω9c	15.2	17.769
C16:1 ω7c	1.2	15.819
C17:1 ω5c ISO	1	16.461
C14:0	0.7	14
C17:0	0.6	17
C10:0	0.4	10

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #24082]	14004	-	-	+/-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24082]	Sample type/isolated from	heart of an Australian spinifex hopping mouse Notomys alexis
[Ref.: #24082]	Host species	Notomys alexis
[Ref.: #24082]	Country	Australia
[Ref.: #24082]	Country ISO 3 Code	AUS
[Ref.: #24082]	Continent	Australia and Oceania

[Ref.: #45701]	Sample type/isolated from	Hopping mice heart
[Ref.: #45701]	Geographic location (country and/or sea, region)	South Perth
[Ref.: #45701]	Country	Australia
[Ref.: #45701]	Country ISO 3 Code	AUS
[Ref.: #45701]	Continent	Australia and Oceania

[Ref.: #121355]	Sample type/isolated from	Animal, Septicaemia of spinifex hopping mouse, Notomys alexis
[Ref.: #121355]	Country	Australia
[Ref.: #121355]	Country ISO 3 Code	AUS
[Ref.: #121355]	Continent	Australia and Oceania
[Ref.: #121355]	Isolation date	1979-01-02
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Organ	#Heart

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR001919 (>99% sequence identity) for Streptobacillus notomytis from Microbeatlas

Aquatic Samples	601
Soil Samples	1
Animal Samples	410
Plant Samples	6
Total Samples	1018

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121355]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24082]	Streptobacillus notomytis strain AHL 370-1 16S ribosomal RNA gene, partial sequence	KR001919	1481	ENA	1712031 tax ID
[Ref.: #24082]	Streptobacillus notomytis mRNA for 16S ribosomal rRNA, type strain AHL 370-1T	Z35304	1485	ENA	1712031 tax ID

[Ref.: #24082]

GC-content

28.1 mol%

Availability in culture collections External links

[Ref.: #24082]

Culture collection no.

DSM 100026, CCM 8593, CCUG 12425, AHL 370-1, CIP 110949

[Ref.: #90640]

SI-ID 57390

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).	Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001050	2016	*
Phylogeny	Caviibacter abscessus gen. nov., sp. nov., a member of the family Leptotrichiaceae isolated from guinea pigs (Cavia porcellus).	Eisenberg T, Glaeser SP, Ewers C, Semmler T, Drescher B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000922	2016	*
Phylogeny	Streptobacillus notomytis sp. nov., isolated from a spinifex hopping mouse (Notomys alexis Thomas, 1922), and emended description of Streptobacillus Levaditi et al. 1925, Eisenberg et al. 2015 emend.	Eisenberg T, Glaeser SP, Ewers C, Semmler T, Nicklas W, Rau J, Mauder N, Hofmann N, Imaoka K, Kimura M, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000654	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24082

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100026

#41886 ; Curators of the CIP;
#45701 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12425

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90640

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID57390.1 )

#121355 Collection of Institut Pasteur ; Curators of the CIP; CIP 110949
* These data were automatically processed and therefore are not curated

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