Strain identifier

BacDive ID: 132181

Type strain: Yes

Species: Microbacterium hydrothermale

Strain Designation: 0704C9-2

Strain history: <- BCCM/LMG, University of Gent, Belgium; LMG 27542 <- G. Zhang, Key Laboratory of Marine Biogenetic Resources, Xiamen, PR China; 0704C9-2

NCBI tax ID(s): 857427 (species)

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General

@ref: 23970

BacDive-ID: 132181

DSM-Number: 103239

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Microbacterium hydrothermale 0704C9-2 is a mesophilic bacterium that was isolated from hydrothermal sediment, Indian Ocean depth 2943 m .

NCBI tax id

  • NCBI tax id: 857427
  • Matching level: species

strain history

  • @ref: 23970
  • history: <- BCCM/LMG, University of Gent, Belgium; LMG 27542 <- G. Zhang, Key Laboratory of Marine Biogenetic Resources, Xiamen, PR China; 0704C9-2

doi: 10.13145/bacdive132181.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium hydrothermale
  • full scientific name: Microbacterium hydrothermale Zhang et al. 2014

@ref: 23970

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium hydrothermale

full scientific name: Microbacterium hydrothermale Zhang et al. 2014

strain designation: 0704C9-2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 23970
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 23970
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23970
  • sample type: hydrothermal sediment, Indian Ocean depth 2943 m (High Seas)
  • geographic location: Latitude 27° 50.99' S, Longitude 63° 56.12' E
  • country: Indian Ocean
  • latitude: -27.85
  • longitude: 63.9333

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 23970
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23970
  • description: Microbacterium hydrothermale strain 0704C9-2 16S ribosomal RNA gene, partial sequence
  • accession: HM222660
  • length: 1479
  • database: ena
  • NCBI tax ID: 857427

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbacterium hydrothermale CGMCC 1.125122721755905draftimg857427
66792Microbacterium hydrothermale CGMCC 1.12512GCA_025960885contigncbi857427

External links

@ref: 23970

culture collection no.: DSM 103239, CGMCC 1.12512, LMG 27542

straininfo link

  • @ref: 90536
  • straininfo: 387987

literature

  • topic: Phylogeny
  • Pubmed-ID: 25052400
  • title: Microbacterium hydrothermale sp. nov., an actinobacterium isolated from hydrothermal sediment.
  • authors: Zhang Y, Ren H, Zhang G
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.061697-0
  • year: 2014
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Hydrothermal Vents/*microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23970Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103239Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103239)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90536Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID387987.1