Strain identifier
BacDive ID: 132106
Type strain: 
Species: Xylella fastidiosa
Strain Designation: ALS-BC
Strain history: <- BCCM/LMG <- J. Hartung, Fruit Laboratory, Agricultural Research Service, USDA, Beltsville Agricultural Research Center, USA <- ATCC <- J. Wells, J. M. Wells, Agricultural Research Service, USDA, Rutgers University New Brunswick, USA; <- B. C. Raju
NCBI tax ID(s): 2371 (species)
General
@ref: 23896
BacDive-ID: 132106
DSM-Number: 103417
keywords: 16S sequence, Bacteria, plant pathogen
description: Xylella fastidiosa ALS-BC is a plant pathogen that was isolated from almond plant.
NCBI tax id
- NCBI tax id: 2371
- Matching level: species
strain history
- @ref: 23896
- history: <- BCCM/LMG <- J. Hartung, Fruit Laboratory, Agricultural Research Service, USDA, Beltsville Agricultural Research Center, USA <- ATCC <- J. Wells, J. M. Wells, Agricultural Research Service, USDA, Rutgers University New Brunswick, USA; <- B. C. Raju
doi: 10.13145/bacdive132106.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xylella
- species: Xylella fastidiosa
- full scientific name: Xylella fastidiosa Wells et al. 1987
synonyms
- @ref: 20215
- synonym: Xylella fastidiosa subsp. piercei
@ref: 23896
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Lysobacteraceae
genus: Xylella
species: Xylella fastidiosa
full scientific name: Xylella fastidiosa Wells et al. 1987
strain designation: ALS-BC
type strain: no
Culture and growth conditions
culture medium
- @ref: 23896
- name: BOSEA MEDIUM (DSMZ Medium 1052)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1052
- composition: Name: BOSEA MEDIUM (DSMZ Medium 1052) Composition: Agar 15.0 g/l ACES 10.0 g/l Yeast extract 10.0 g/l Activated charcoal 2.0 g/l Distilled water
culture temp
- @ref: 23896
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | + | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23896 | - | - | + | - | +/- | +/- | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 23896
- sample type: almond (Prunus dulcis) plant
- host species: Prunus dulcis
- geographic location: California
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Tree
Safety information
risk assessment
- @ref: 23896
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 124043
- description: Xylella fastidiosa isolate 6746 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile, and tRNA-Ala genes, complete sequence.
- accession: AY388465
- length: 510
- database: nuccore
- NCBI tax ID: 2371
External links
@ref: 23896
culture collection no.: DSM 103417, ATCC 35870, LMG 15099
straininfo link
- @ref: 90462
- straininfo: 10389
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23896 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103417 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103417) | |
| 68369 | Automatically annotated from API 20NE | |||
| 90462 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID10389.1 | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |