Strain identifier

BacDive ID: 132018

Type strain: No

Species: Clostridium jeddahitimonense

Strain Designation: CL-2

Strain history: <- A. Papadioti, Univ. Méditerranée, Marseille, France; CL-2 <- G. Noemie {2014}

NCBI tax ID(s): 1869227 (species)

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@ref: 23809

BacDive-ID: 132018

DSM-Number: 28716

keywords: 16S sequence, Bacteria, mesophilic

description: Clostridium jeddahitimonense CL-2 is a mesophilic bacterium that was isolated from human feces from an obese individual.

NCBI tax id

  • NCBI tax id: 1869227
  • Matching level: species

strain history

  • @ref: 23809
  • history: <- A. Papadioti, Univ. Méditerranée, Marseille, France; CL-2 <- G. Noemie {2014}

doi: 10.13145/bacdive132018.20230509.8.1

Name and taxonomic classification


  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium jeddahitimonense
  • full scientific name: Clostridium jeddahitimonense Kieu et al. 2021

@ref: 23809

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: unclassified

species: unclassified bacterium

full scientific name: unclassified bacterium

strain designation: CL-2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23809
  • name: PY + X MEDIUM (DSMZ Medium 104b)
  • growth: yes
  • link:
  • composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 23809
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information


  • @ref: 23809
  • sample type: human feces from an obese individual
  • country: Saudi Arabia
  • SAU
  • continent: Asia

isolation source categories

#Host Body Product#Gastrointestinal tract#Feces (Stool)


  • @ref: 69479
  • File name: preview.99_2322.png
  • url:;96_1253;97_1486;98_1811;99_2322&stattab=map
  • Last taxonomy: Clostridium
  • 16S sequence: LK021118
  • Sequence Identity:
  • Total samples: 14154
  • soil counts: 201
  • aquatic counts: 401
  • animal counts: 13320
  • plant counts: 232

Sequence information

16S sequences

  • @ref: 23809
  • description: Clostridium sp. CL-2 partial 16S rRNA gene, isolate CL-2
  • accession: LK021118
  • length: 1472
  • database: ena
  • NCBI tax ID: 1499684

External links

@ref: 23809

culture collection no.: DSM 28716, CSUR P1230


  • topic: Phylogeny
  • Pubmed-ID: 34297170
  • title: Clostridium culturomicium sp. nov. and Clostridium jeddahitimonense sp. nov., novel members of the Clostridium genus isolated from the stool of an obese Saudi Arabian.
  • authors: Kieu HT, Garrigou N, Fadlane A, Brechard L, Armstrong N, Decloquement P, Yasir M, Azhar EI, Al-Masaudi SB, Lagier JC, Tidjani Alou M, Raoult D
  • journal: Curr Microbiol
  • DOI: 10.1007/s00284-021-02616-4
  • year: 2021
  • mesh: Bacterial Typing Techniques, *Clostridium/genetics, DNA, Bacterial/genetics, *Fatty Acids, Humans, Male, Obesity, Phylogeny, RNA, Ribosomal, 16S/genetics, Saudi Arabia, Sequence Analysis, DNA
  • topic2: Pathogenicity


20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23809Curators of the DSMZ Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28716)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 beta