General

@ref: 23809

BacDive-ID: 132018

DSM-Number: 28716

keywords: 16S sequence, Bacteria, mesophilic

description: Clostridium jeddahitimonense CL-2 is a mesophilic bacterium that was isolated from human feces from an obese individual.

NCBI tax id

• NCBI tax id: 1869227
• Matching level: species

strain history

• @ref: 23809
• history: <- A. Papadioti, Univ. Méditerranée, Marseille, France; CL-2 <- G. Noemie {2014}

doi: 10.13145/bacdive132018.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Clostridia
• order: Eubacteriales
• family: Clostridiaceae
• genus: Clostridium
• species: Clostridium jeddahitimonense
• full scientific name: Clostridium jeddahitimonense Kieu et al. 2021

@ref: 23809

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: unclassified

species: unclassified bacterium

full scientific name: unclassified bacterium

strain designation: CL-2

type strain: no

Culture and growth conditions

culture medium

• @ref: 23809
• name: PY + X MEDIUM (DSMZ Medium 104b)
• growth: yes
• link: https://mediadive.dsmz.de/medium/104b
• composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

• @ref: 23809
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 23809
• sample type: human feces from an obese individual
• country: Saudi Arabia
• origin.country: SAU
• continent: Asia

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_2322.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_1486;98_1811;99_2322&stattab=map
• Last taxonomy: Clostridium
• 16S sequence: LK021118
• Sequence Identity:
• Total samples: 14154
• soil counts: 201
• aquatic counts: 401
• animal counts: 13320
• plant counts: 232

Sequence information

16S sequences

• @ref: 23809
• description: Clostridium sp. CL-2 partial 16S rRNA gene, isolate CL-2
• accession: LK021118
• length: 1472
• database: ena
• NCBI tax ID: 1499684

External links

@ref: 23809

culture collection no.: DSM 28716, CSUR P1230

literature

• topic: Phylogeny
• Pubmed-ID: 34297170
• title: Clostridium culturomicium sp. nov. and Clostridium jeddahitimonense sp. nov., novel members of the Clostridium genus isolated from the stool of an obese Saudi Arabian.
• authors: Kieu HT, Garrigou N, Fadlane A, Brechard L, Armstrong N, Decloquement P, Yasir M, Azhar EI, Al-Masaudi SB, Lagier JC, Tidjani Alou M, Raoult D
• journal: Curr Microbiol
• DOI: 10.1007/s00284-021-02616-4
• year: 2021
• mesh: Bacterial Typing Techniques, *Clostridium/genetics, DNA, Bacterial/genetics, *Fatty Acids, Humans, Male, Obesity, Phylogeny, RNA, Ribosomal, 16S/genetics, Saudi Arabia, Sequence Analysis, DNA
• topic2: Pathogenicity

Reference