Strain identifier

BacDive ID: 131933

Type strain: Yes

Species: Sanguibacter inulinus

Strain Designation: ST-50

Strain history: CIP <- 2014, CCUG <- 1996, B. Phillips, NCFB, Reading, UK

NCBI tax ID(s): 60922 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23725

BacDive-ID: 131933

DSM-Number: 100099

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive, rod-shaped, animal pathogen

description: Sanguibacter inulinus ST-50 is a Gram-positive, rod-shaped animal pathogen that was isolated from blood sample of healthy cow.

NCBI tax id

  • NCBI tax id: 60922
  • Matching level: species

strain history

@refhistory
23725<- CCUG; CCUG 36689 <-B. Phillips, NCFB, Reading, UK; ST-50
67770CCUG 36689 <-- NCFB 3024 <-- J. F. Fernandez-Garayzabal ST-50.
120273CIP <- 2014, CCUG <- 1996, B. Phillips, NCFB, Reading, UK

doi: 10.13145/bacdive131933.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Jonesiaceae
  • genus: Sanguibacter
  • species: Sanguibacter inulinus
  • full scientific name: Sanguibacter inulinus Pascual et al. 1996

@ref: 23725

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jonesiaceae

genus: Sanguibacter

species: Sanguibacter inulinus

full scientific name: Sanguibacter inulinus Pascual et al. 1996 emend. Pikuta et al. 2017

strain designation: ST-50

type strain: yes

Morphology

cell morphology

  • @ref: 120273
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23725TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39780MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120273CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
23725positivegrowth28
39780positivegrowth30
67770positivegrowth28

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53327C14:03.714
    53327C15:02.215
    53327C16:07.316
    53327C17:00.517
    53327C18:0118
    53327C13:0 ANTEISO0.512.701
    53327C14:0 ISO1.613.618
    53327C15:0 ANTEISO59.814.711
    53327C15:0 ISO314.621
    53327C15:1 ANTEISO A3.614.526
    53327C16:0 iso4.615.626
    53327C17:0 anteiso8.116.722
    53327C18:1 ω9c1.617.769
    53327C18:2 ω6,9c/C18:0 ANTE2.517.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
23725blood sample of healthy cowSpainESPEurope
53327Bovine blood
67770Venous blood from healthy cow
120273Animal, Bovine, blood

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_6615.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3136;97_3840;98_4877;99_6615&stattab=map
  • Last taxonomy: Sanguibacter
  • 16S sequence: X79451
  • Sequence Identity:
  • Total samples: 28524
  • soil counts: 6877
  • aquatic counts: 4433
  • animal counts: 13080
  • plant counts: 4134

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
23725yes, in single cases1Risk group (German classification)
1202731Risk group (French classification)

Sequence information

16S sequences

  • @ref: 23725
  • description: Sanguibacter suarezii ST50 16S rDNA
  • accession: X79451
  • length: 1492
  • database: nuccore
  • NCBI tax ID: 60922

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sanguibacter inulinus DSM100099.1GCA_015234745contigncbi60922
66792Sanguibacter inulinus strain DSM 10009960922.5wgspatric60922
66792Sanguibacter inulinus strain DSM100099.160922.6wgspatric60922
67770Sanguibacter inulinus DSM 100099GCA_013415325contigncbi60922

GC content

  • @ref: 67770
  • GC-content: 70.5
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes89.876no
anaerobicno98.814no
halophileno85.93no
spore-formingno79.991no
glucose-utilyes88.234no
thermophileno99.716yes
flagellatedno87.998no
aerobicyes85.435no
motileyes80.682no
glucose-fermentno53.112no

External links

@ref: 23725

culture collection no.: DSM 100099, CCUG 36689, CIP 104915, JCM 19122, NCIMB 703024 (formerly NCFB 3024), CIP 110775, NCFB 3024

straininfo link

  • @ref: 90320
  • straininfo: 56888

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8782694Sanguibacter inulinus sp. nov.Pascual C, Collins MD, Grimont PA, Dominguez L, Fernandez-Garayzabal JFInt J Syst Bacteriol10.1099/00207713-46-3-8111996Actinomycetales/*classification/genetics/isolation & purification, Animals, Base Sequence, Cattle, DNA, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16SGenetics
Phylogeny18319451Sanguibacter soli sp. nov., isolated from soil of a ginseng field.Kim MK, Pulla RK, Kim SY, Yi TH, Soung NK, Yang DCInt J Syst Evol Microbiol10.1099/ijs.0.65399-02008Actinomycetales/classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Panax/*growth & development, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23725Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100099Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100099)
39780Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30587
53327Curators of the CCUGhttps://www.ccug.se/strain?id=36689Culture Collection University of Gothenburg (CCUG) (CCUG 36689)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90320Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID56888.1
120273Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110775Collection of Institut Pasteur (CIP 110775)