Strain identifier
BacDive ID: 131933
Type strain:
Species: Sanguibacter inulinus
Strain Designation: ST-50
Strain history: CIP <- 2014, CCUG <- 1996, B. Phillips, NCFB, Reading, UK
NCBI tax ID(s): 60922 (species)
General
@ref: 23725
BacDive-ID: 131933
DSM-Number: 100099
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, animal pathogen
description: Sanguibacter inulinus ST-50 is a mesophilic, Gram-positive animal pathogen that was isolated from blood sample of healthy cow.
NCBI tax id
- NCBI tax id: 60922
- Matching level: species
strain history
@ref | history |
---|---|
23725 | <- CCUG; CCUG 36689 <-B. Phillips, NCFB, Reading, UK; ST-50 |
67770 | CCUG 36689 <-- NCFB 3024 <-- J. F. Fernandez-Garayzabal ST-50. |
120273 | CIP <- 2014, CCUG <- 1996, B. Phillips, NCFB, Reading, UK |
doi: 10.13145/bacdive131933.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Jonesiaceae
- genus: Sanguibacter
- species: Sanguibacter inulinus
- full scientific name: Sanguibacter inulinus Pascual et al. 1996
@ref: 23725
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Jonesiaceae
genus: Sanguibacter
species: Sanguibacter inulinus
full scientific name: Sanguibacter inulinus Pascual et al. 1996 emend. Pikuta et al. 2017
strain designation: ST-50
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
120273 | positive | rod-shaped | no |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
23725 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
39780 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
120273 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
23725 | positive | growth | 28 | mesophilic |
39780 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.986 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53327 C14:0 3.7 14 53327 C15:0 2.2 15 53327 C16:0 7.3 16 53327 C17:0 0.5 17 53327 C18:0 1 18 53327 C13:0 ANTEISO 0.5 12.701 53327 C14:0 ISO 1.6 13.618 53327 C15:0 ANTEISO 59.8 14.711 53327 C15:0 ISO 3 14.621 53327 C15:1 ANTEISO A 3.6 14.526 53327 C16:0 iso 4.6 15.626 53327 C17:0 anteiso 8.1 16.722 53327 C18:1 ω9c 1.6 17.769 53327 C18:2 ω6,9c/C18:0 ANTE 2.5 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
23725 | blood sample of healthy cow | Spain | ESP | Europe |
53327 | Bovine blood | |||
67770 | Venous blood from healthy cow | |||
120273 | Animal, Bovine, blood |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_6615.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3136;97_3840;98_4877;99_6615&stattab=map
- Last taxonomy: Sanguibacter
- 16S sequence: X79451
- Sequence Identity:
- Total samples: 28524
- soil counts: 6877
- aquatic counts: 4433
- animal counts: 13080
- plant counts: 4134
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
23725 | yes, in single cases | 1 | Risk group (German classification) |
120273 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 23725
- description: Sanguibacter suarezii ST50 16S rDNA
- accession: X79451
- length: 1492
- database: ena
- NCBI tax ID: 60922
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sanguibacter inulinus DSM100099.1 | GCA_015234745 | contig | ncbi | 60922 |
66792 | Sanguibacter inulinus strain DSM 100099 | 60922.5 | wgs | patric | 60922 |
66792 | Sanguibacter inulinus strain DSM100099.1 | 60922.6 | wgs | patric | 60922 |
67770 | Sanguibacter inulinus DSM 100099 | GCA_013415325 | contig | ncbi | 60922 |
GC content
- @ref: 67770
- GC-content: 70.5
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | yes | 89.876 | no |
anaerobic | no | 98.814 | no |
halophile | no | 85.93 | no |
spore-forming | no | 79.991 | no |
glucose-util | yes | 88.234 | no |
thermophile | no | 99.716 | yes |
flagellated | no | 87.998 | no |
aerobic | yes | 85.435 | no |
motile | yes | 80.682 | no |
glucose-ferment | no | 53.112 | no |
External links
@ref: 23725
culture collection no.: DSM 100099, CCUG 36689, CIP 104915, JCM 19122, NCIMB 703024 (formerly NCFB 3024), CIP 110775, NCFB 3024
straininfo link
- @ref: 90320
- straininfo: 56888
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 8782694 | Sanguibacter inulinus sp. nov. | Pascual C, Collins MD, Grimont PA, Dominguez L, Fernandez-Garayzabal JF | Int J Syst Bacteriol | 10.1099/00207713-46-3-811 | 1996 | Actinomycetales/*classification/genetics/isolation & purification, Animals, Base Sequence, Cattle, DNA, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S | Genetics |
Phylogeny | 18319451 | Sanguibacter soli sp. nov., isolated from soil of a ginseng field. | Kim MK, Pulla RK, Kim SY, Yi TH, Soung NK, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.65399-0 | 2008 | Actinomycetales/classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Panax/*growth & development, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity | Genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23725 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100099 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100099) | |
39780 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30587 | ||
53327 | Curators of the CCUG | https://www.ccug.se/strain?id=36689 | Culture Collection University of Gothenburg (CCUG) (CCUG 36689) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
90320 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID56888.1 | |
120273 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110775 | Collection of Institut Pasteur (CIP 110775) |