Name: Sanguibacter inulinus ST-50
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131933

Type strain:

Species: Sanguibacter inulinus

Strain Designation: ST-50

Culture col. no.: DSM 100099, CCUG 36689, CIP 104915, JCM 19122, NCIMB 703024 (formerly NCFB 3024), CIP 110775, NCFB 3024

Strain history: CIP <- 2014, CCUG <- 1996, B. Phillips, NCFB, Reading, UK

NCBI tax ID(s): 60922 (species)

SI-ID 56888

CCUG 36689, NCFB 3024, NCIMB 703024, CIP106681, JCM 11442, CIP 104915, JCM 19122, DSM 100099, CIP 110775

Section

Sanguibacter inulinus ST-50 is a mesophilic, Gram-positive animal pathogen that was isolated from blood sample of healthy cow.

Gram-positive
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Jonesiaceae*
	Genus	*Sanguibacter*
	Species	**Sanguibacter inulinus**
	Full Scientific Name (LPSN)	Sanguibacter inulinus Pascual et al. 1996

Information on morphological and physiological properties Morphology

[Ref.: #120273]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120273]	Cell shape	rod-shaped

[Ref.: #120273]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23725]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #23725]

Culture medium growth

[Ref.: #23725]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23725]

Culture medium composition

expand / minimize

[Ref.: #39780]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #39780]

Culture medium growth

[Ref.: #39780]

Culture medium composition

expand / minimize

[Ref.: #120273]

Culture medium

CIP Medium 72

[Ref.: #120273]

Culture medium growth

[Ref.: #120273]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #23725]	growth	28 °C
[Ref.: #39780]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #23725]	Temperature range	mesophilic
[Ref.: #39780]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #53327]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	59.8	14.711
C17:0 anteiso	8.1	16.722
C16:0	7.3	16
C16:0 iso	4.6	15.626
C14:0	3.7	14
C15:1 ANTEISO A	3.6	14.526
C15:0 ISO	3	14.621
C18:2 ω6,9c/C18:0 ANTE	2.5	17.724
C15:0	2.2	15
C14:0 ISO	1.6	13.618
C18:1 ω9c	1.6	17.769
C18:0	1	18
C13:0 ANTEISO	0.5	12.701
C17:0	0.5	17

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23725]	Sample type/isolated from	blood sample of healthy cow
[Ref.: #23725]	Country	Spain
[Ref.: #23725]	Country ISO 3 Code	ESP
[Ref.: #23725]	Continent	Europe

[Ref.: #53327]	Sample type/isolated from	Bovine blood

[Ref.: #67770]	Sample type/isolated from	Venous blood from healthy cow

[Ref.: #120273]	Sample type/isolated from	Animal, Bovine, blood
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X79451 (>99% sequence identity) for Sanguibacter from Microbeatlas

Aquatic Samples	4433
Soil Samples	6877
Animal Samples	13080
Plant Samples	4134
Total Samples	28524

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23725]	Pathogenicity (animal)	yes, in single cases
[Ref.: #23725]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120273]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23725]	Sanguibacter suarezii ST50 16S rDNA	X79451	1492	ENA	60922 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sanguibacter inulinus DSM 100099	GCA_013415325	contig	GenBank	60922 tax ID
[Ref.: #66792]	Sanguibacter inulinus DSM100099.1	GCA_015234745	contig	GenBank	60922 tax ID	*
[Ref.: #66792]	Sanguibacter inulinus strain DSM 100099	60922.5	wgs	PATRIC	60922 tax ID	*
[Ref.: #66792]	Sanguibacter inulinus strain DSM100099.1	60922.6	wgs	PATRIC	60922 tax ID	*

[Ref.: #67770]

GC-content

70.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sanguibacter inulinus strain DSM100099.1 PATRIC: 60922.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sanguibacter inulinus strain DSM 100099 PATRIC: 60922.5
[Ref.: #69480]	gram-positive	yes	89.876	no
[Ref.: #69480]	anaerobic	no	98.814	no
[Ref.: #69480]	halophile	no	85.93	no
[Ref.: #69480]	spore-forming	no	79.991	no
[Ref.: #69480]	glucose-util	yes	88.234	no
[Ref.: #69480]	thermophile	no	99.716	yes
[Ref.: #69480]	flagellated	no	87.998	no
[Ref.: #69480]	aerobic	yes	85.435	no
[Ref.: #69480]	motile	yes	80.682	no
[Ref.: #69480]	glucose-ferment	no	53.112	no

Availability in culture collections External links

[Ref.: #23725]

Culture collection no.

DSM 100099, CCUG 36689, CIP 104915, JCM 19122, NCIMB 703024 (formerly NCFB 3024), CIP 110775, NCFB 3024

[Ref.: #90320]

SI-ID 56888

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sanguibacter soli sp. nov., isolated from soil of a ginseng field.	Kim MK, Pulla RK, Kim SY, Yi TH, Soung NK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.65399-0	2008	*
Phylogeny	Sanguibacter inulinus sp. nov.	Pascual C, Collins MD, Grimont PA, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Bacteriol	10.1099/00207713-46-3-811	1996	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23725

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100099

#39780 ; Curators of the CIP;
#53327 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 36689

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90320

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID56888.1 )

#120273 Collection of Institut Pasteur ; Curators of the CIP; CIP 110775
* These data were automatically processed and therefore are not curated

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Sanguibacter inulinus strain DSM100099.1

Sanguibacter inulinus strain DSM 100099

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