Strain identifier

BacDive ID: 131876

Type strain: No

Species: Pseudomonas mendocina

Strain Designation: S5.2

Strain history: <- Microbiome Laboratory, University of Malaya; S5.2 <- S. P. Gan <- K. G. Chan

NCBI tax ID(s): 300 (species)

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General

@ref: 23668

BacDive-ID: 131876

DSM-Number: 102033

keywords: genome sequence, Bacteria, mesophilic

description: Pseudomonas mendocina S5.2 is a mesophilic bacterium that was isolated from vineyard soil.

NCBI tax id

  • NCBI tax id: 300
  • Matching level: species

strain history

  • @ref: 23668
  • history: <- Microbiome Laboratory, University of Malaya; S5.2 <- S. P. Gan <- K. G. Chan

doi: 10.13145/bacdive131876.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas mendocina
  • full scientific name: Pseudomonas mendocina Palleroni 1970 (Approved Lists 1980)

@ref: 23668

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas mendocina

full scientific name: Pseudomonas mendocina Palleroni 1970

strain designation: S5.2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23668
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23668
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23668
  • sample type: vineyard soil
  • geographic location: Riquewihr
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Vineyard
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 23668
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas mendocina S5.2GCA_000733715completencbi1225174
66792Pseudomonas mendocina S5.21225174.6plasmidpatric1225174
66792Pseudomonas mendocina S5.21225174.5wgspatric1225174
66792Pseudomonas mendocina S5.22823421272completeimg1225174

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.096no
motileyes91.096no
flagellatedyes91.7no
flagellatedyes91.7no
gram-positiveno98.894no
gram-positiveno98.894no
anaerobicno97.779no
anaerobicno97.779no
aerobicyes93.051no
aerobicyes93.051no
halophileno83.869no
halophileno83.869no
spore-formingno95.534no
spore-formingno95.534no
thermophileno99.768yes
thermophileno99.768yes
glucose-utilyes90.632no
glucose-utilyes90.632no
glucose-fermentno90.17no
glucose-fermentno90.17no

External links

@ref: 23668

culture collection no.: DSM 102033

straininfo link

  • @ref: 90264
  • straininfo: 407924

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics23105092Heavy-metal resistance of a France vineyard soil bacterium, Pseudomonas mendocina strain S5.2, revealed by whole-genome sequencing.Chong TM, Yin WF, Mondy S, Grandclement C, Dessaux Y, Chan KGJ Bacteriol10.1128/JB.01702-122012Agriculture, Animals, France, *Genome, Bacterial, Metals, Heavy/*pharmacology, Molecular Sequence Data, Pseudomonas mendocina/classification/*drug effects/*genetics, *Soil Microbiology, VitisPhylogeny
28655216Phenotypic and genomic survey on organic acid utilization profile of Pseudomonas mendocina strain S5.2, a vineyard soil isolate.Chong TM, Chen JW, See-Too WS, Yu CY, Ang GY, Lim YL, Yin WF, Grandclement C, Faure D, Dessaux Y, Chan KGAMB Express10.1186/s13568-017-0437-72017
Phylogeny35059829Arsenic Resistance Mechanisms in Pseudomonas mendocina SMSKVR-3 Strain Isolated from Khetri Copper Mines, Rajasthan, India.Mishra S, Kumar S, Verma SKCurr Microbiol10.1007/s00284-021-02749-62022*Arsenic/analysis, Copper/pharmacology, India, *Pseudomonas mendocina, Siderophores

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23668Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102033Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102033)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90264Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407924.1