Pseudomonas mendocina (DSM 102033, S5.2)

Name: Pseudomonas mendocina (DSM 102033, S5.2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131876

Type strain

Strain Designation S5.2

Culture col. no. DSM 102033 S5.2

NCBI tax ID(s) 300

Special Collections DSMZ

History <- Microbiome Laboratory, University of Malaya; S5.2 <- S. P. Gan <- K. G. Chan

Links

Pseudomonas mendocina S5.2 is a mesophilic prokaryote that was isolated from vineyard soil.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 407924

DSM 102033

@ref 20215

Last LPSN update 2026-02-09 11:31:34

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas mendocina

Full scientific name Pseudomonas mendocina Palleroni 1970 (Approved Lists 1980)

Synonyms (1)

Ectopseudomonas mendocina

BacDive ID	Other strains from **Pseudomonas mendocina** (14)	Type strain
12866	P. mendocina CH50, CH 50, DSM 50017, ATCC 25411, CCUG ... (type strain)
100175	P. mendocina STI09280(IMET), LA97, IFO 14913, IMET 9280, ...
134841	P. mendocina CH 67, CIP 75.22
135447	P. mendocina CIP 100027
135691	P. mendocina CH 20, CIP 75.19, ATCC 25412, LMG 5941, NCTC ...
138954	P. mendocina CH 35, CIP 75.20
142349	P. mendocina CCUG 11978
146158	P. mendocina CCUG 30480
146261	P. mendocina CCUG 30728
147011	P. mendocina CCUG 32641
148054	P. mendocina CCUG 34738
150188	P. mendocina CCUG 39226
166063	P. mendocina JCM 9792
166065	P. mendocina JCM 9794

Morphology

Cell morphology

@ref	Confidence	Gram stain
125439	93.4
125439	99.9	negative
125438	91.901
125438	99.5	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23668	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23668	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.339
125439	aerobe	93.1

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Vineyard
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
23668	vineyard soil	Riquewihr	France	FRA	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23668	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM73371v2 assembly for Ectopseudomonas mendocina S5.2	complete	GCA_000733715	1225174.8	2823421272	1225174	98.15
66792	Pseudomonas mendocina S5.2	contig		1225174.5		1225174	56.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas mendocina S5.2
NCBI: GCA_000733715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	93.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	yes	93.40	no
125439	spore_formation	BacteriaNetⓘ	no	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas mendocina S5.2 S5.2
NCBI: GCA_000733715.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	98.34	no
125438	aerobic	aerobicⓘ	yes	91.34	no
125438	spore-forming	spore-formingⓘ	no	87.13	no
125438	thermophilic	thermophileⓘ	no	99.49	yes
125438	flagellated	motile2+ⓘ	yes	91.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phenotypic and genomic survey on organic acid utilization profile of Pseudomonas mendocina strain S5.2, a vineyard soil isolate.	Chong TM, Chen JW, See-Too WS, Yu CY, Ang GY, Lim YL, Yin WF, Grandclement C, Faure D, Dessaux Y, Chan KG	AMB Express	10.1186/s13568-017-0437-7	2017
Genetics	Heavy-metal resistance of a France vineyard soil bacterium, Pseudomonas mendocina strain S5.2, revealed by whole-genome sequencing.	Chong TM, Yin WF, Mondy S, Grandclement C, Dessaux Y, Chan KG	J Bacteriol	10.1128/JB.01702-12	2012
Phylogeny	Arsenic Resistance Mechanisms in Pseudomonas mendocina SMSKVR-3 Strain Isolated from Khetri Copper Mines, Rajasthan, India.	Mishra S, Kumar S, Verma SK	Curr Microbiol	10.1007/s00284-021-02749-6	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23668	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102033
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas mendocina (DSM 102033, S5.2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000733715

Genome-based predictions

Predictions

Literature

Literature

References

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