Strain identifier
BacDive ID: 131828
Type strain: 
Species: Nocardia globerula
Strain Designation: MDB 279
Strain history: NCIB 9159 <-- CCM 279 <-- P. H. H. Gray.
NCBI tax ID(s): 1818 (species)
version 8.1 (current version)
General
@ref: 11911
BacDive-ID: 131828
DSM-Number: 44596
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Nocardia globerula MDB 279 is a mesophilic, Gram-positive bacterium of the family Nocardiaceae.
NCBI tax id
- NCBI tax id: 1818
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11911 | <- ATCC <- NCIB <- MDB <- P. Gray |
| 67770 | NCIB 9159 <-- CCM 279 <-- P. H. H. Gray. |
doi: 10.13145/bacdive131828.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia globerula
- full scientific name: Nocardia globerula (Gray 1928) Waksman and Henrici 1948 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycobacterium globerulum
@ref: 11911
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia globerula
full scientific name: Nocardia globerula (Gray 1928) Waksman and Henrici 1948
strain designation: MDB 279
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 11911
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11911 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.918
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_3444.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_3444&stattab=map
- Last taxonomy: Nocardiaceae
- 16S sequence: FR749915
- Sequence Identity:
- Total samples: 5041
- soil counts: 1235
- aquatic counts: 1183
- animal counts: 2519
- plant counts: 104
Safety information
risk assessment
- @ref: 11911
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 11911 | Nocardia globerula strain DSM 44596 16S ribosomal RNA, partial sequence | NR_104795.1 | 1507 | nuccore | 1818 |
| 67770 | Nocardia globerula partial 16S rRNA gene, type strain DSM 44596T | FR749915 | 1507 | ena | 1818 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nocardia globerula strain DSM 44596 | 1818.5 | wgs | patric | 1818 |
| 66792 | Nocardia globerula DSM 44596 | 2770939498 | draft | img | 1818 |
| 67770 | Nocardia globerula DSM 44596 | GCA_008125105 | scaffold | ncbi | 1818 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 89 | no |
| motile | no | 92.54 | no |
| gram-positive | yes | 85.838 | no |
| anaerobic | no | 99.291 | no |
| aerobic | yes | 87.393 | no |
| halophile | no | 90.27 | no |
| spore-forming | no | 62.208 | no |
| glucose-util | yes | 87.867 | no |
| flagellated | no | 98.184 | no |
| thermophile | no | 99.513 | yes |
| glucose-ferment | no | 87.658 | no |
External links
@ref: 11911
culture collection no.: DSM 44596, ATCC 19370, NCIB 9159, JCM 7475, CBS 611.67, CCM 279, NCIMB 9159, VKM Ac-859
straininfo link
- @ref: 90219
- straininfo: 36960
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11911 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44596) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44596 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 90219 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36960.1 | StrainInfo: A central database for resolving microbial strain identifiers |