Name: Nocardia globerula MDB 279
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131828

Type strain:

Species: Nocardia globerula

Strain Designation: MDB 279

Culture col. no.: DSM 44596, ATCC 19370, NCIB 9159, JCM 7475, CBS 611.67, CCM 279, NCIMB 9159, VKM Ac-859

Strain history: NCIB 9159 <-- CCM 279 <-- P. H. H. Gray.

NCBI tax ID(s): 1818 (species)

SI-ID 36960

ATCC 19370, NCIB 9159, JCM 7475, CCM 279, NCIMB 9159, VKM Ac-859, CBS 611.67, DSM 44596, DSM 43574

Other strains from Nocardia globerula

N. globerula BU 57,1, DSM 46019, ATCC 15903, ...
N. globerula 3909-92E, CIP 104776, ATCC 21292, ...

Section

Nocardia globerula MDB 279 is a mesophilic, Gram-positive bacterium of the family Nocardiaceae.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia globerula**
	Full Scientific Name (LPSN)	Nocardia globerula (Gray 1928) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Mycobacterium globerulum"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11911]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #11911]

Culture medium growth

[Ref.: #11911]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11911]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11911]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #11911]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.918

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence FR749915 (>99% sequence identity) for Nocardiaceae from Microbeatlas

Aquatic Samples	1183
Soil Samples	1235
Animal Samples	2519
Plant Samples	104
Total Samples	5041

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11911]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11911]	Nocardia globerula strain DSM 44596 16S ribosomal RNA, partial sequence	NR_104795.1	1507	GenBank	1818 tax ID
[Ref.: #67770]	Nocardia globerula partial 16S rRNA gene, type strain DSM 44596T	FR749915	1507	ENA	1818 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia globerula DSM 44596	GCA_008125105	scaffold	GenBank	1818 tax ID
[Ref.: #66792]	Nocardia globerula strain DSM 44596	1818.5	wgs	PATRIC	1818 tax ID	*
[Ref.: #66792]	Nocardia globerula DSM 44596	2770939498	draft	JGI IMG/M	1818 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardia globerula strain DSM 44596 PATRIC: 1818.6
[Ref.: #69481]	spore-forming	no	89	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardia globerula strain DSM 44596 PATRIC: 1818.5
[Ref.: #69480]	motile	no	92.54	no
[Ref.: #69480]	gram-positive	yes	85.838	no
[Ref.: #69480]	anaerobic	no	99.291	no
[Ref.: #69480]	aerobic	yes	87.393	no
[Ref.: #69480]	halophile	no	90.27	no
[Ref.: #69480]	spore-forming	no	62.208	no
[Ref.: #69480]	glucose-util	yes	87.867	no
[Ref.: #69480]	flagellated	no	98.184	no
[Ref.: #69480]	thermophile	no	99.513	yes
[Ref.: #69480]	glucose-ferment	no	87.658	no

Availability in culture collections External links

[Ref.: #11911]

Culture collection no.

DSM 44596, ATCC 19370, NCIB 9159, JCM 7475, CBS 611.67, CCM 279, NCIMB 9159, VKM Ac-859

[Ref.: #90219]

SI-ID 36960

References

#11911

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44596

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90219

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36960.1 )

* These data were automatically processed and therefore are not curated

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Nocardia globerula strain DSM 44596

Nocardia globerula strain DSM 44596

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