Strain identifier

BacDive ID: 13182

Type strain: Yes

Species: Pseudomonas seleniipraecipitans

Strain Designation: CA-5

Strain history: <- W. J. Hunter, USDA/ARS, Fort Collins, Colorado, USA; CA-5

NCBI tax ID(s): 640205 (species)

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General

@ref: 17845

BacDive-ID: 13182

DSM-Number: 25106

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Pseudomonas seleniipraecipitans CA-5 is a mesophilic, motile bacterium that was isolated from soil sample.

NCBI tax id

  • NCBI tax id: 640205
  • Matching level: species

strain history

  • @ref: 17845
  • history: <- W. J. Hunter, USDA/ARS, Fort Collins, Colorado, USA; CA-5

doi: 10.13145/bacdive13182.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas seleniipraecipitans
  • full scientific name: Pseudomonas seleniipraecipitans corrig. Hunter and Manter 2011

  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas seleniipraecipitatus

@ref: 17845

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas seleniipraecipitans

full scientific name: Pseudomonas seleniipraecipitans Hunter and Manter 2011

strain designation: CA-5

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes99.139
6948099.987negative

multimedia

  • @ref: 17845
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25106.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 17845
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 17845
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.929

compound production

@refcompound
17845glutathione reductase
17845thioredoxin reductase

Isolation, sampling and environmental information

isolation

  • @ref: 17845
  • sample type: soil sample
  • geographic location: California, Fresno County
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7577.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_2761;99_7577&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: FJ422810
  • Sequence Identity:
  • Total samples: 33
  • soil counts: 3
  • aquatic counts: 8
  • animal counts: 9
  • plant counts: 13

Safety information

risk assessment

  • @ref: 17845
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17845
  • description: Pseudomonas seleniipraecipitans strain CA5 16S ribosomal RNA gene, partial sequence
  • accession: FJ422810
  • length: 1321
  • database: ena
  • NCBI tax ID: 640205

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas seleniipraecipitans LMG 25475GCA_900102335scaffoldncbi640205
66792Pseudomonas seleniipraecipitans strain LMG 25475640205.3wgspatric640205
66792Pseudomonas seleniipraecipitans LMG 254752671180043draftimg640205

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.503no
flagellatedyes80.653no
gram-positiveno98.751no
anaerobicno97.468no
aerobicyes91.117no
halophileno80.441no
spore-formingno94.948no
glucose-fermentno91.027no
thermophileno99.4no
glucose-utilyes92.382no

External links

@ref: 17845

culture collection no.: DSM 25106, LMG 25475, NRRL B-51283

straininfo link

  • @ref: 82390
  • straininfo: 364611

Reference

@idauthorscataloguedoi/urltitle
17845Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25106)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25106
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82390Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID364611.1StrainInfo: A central database for resolving microbial strain identifiers