Name: Pseudomonas seleniipraecipitans CA-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13182

Type strain:

Species: Pseudomonas seleniipraecipitans

Strain Designation: CA-5

Culture col. no.: DSM 25106, LMG 25475, NRRL B-51283

Strain history: <- W. J. Hunter, USDA/ARS, Fort Collins, Colorado, USA; CA-5

NCBI tax ID(s): 640205 (species)

SI-ID 364611

LMG 25475, NRRL B-51283, DSM 25106

Section

Pseudomonas seleniipraecipitans CA-5 is a mesophilic, motile bacterium that was isolated from soil sample.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas seleniipraecipitans**
	Full Scientific Name (LPSN)	Pseudomonas seleniipraecipitans corrig. Hunter and Manter 2011

Synonym

Pseudomonas seleniipraecipitatus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #69480]	Motility	yes Confidence in %99.139

Multimedia content

[Ref.: #17845]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17845]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #17845]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #17845]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17845]			growth	28 °C

[Ref.: #17845]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.929

[Ref.: #17845]	Name of produced compound	glutathione reductase
[Ref.: #17845]	Name of produced compound	thioredoxin reductase

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17845]	Sample type/isolated from	soil sample
[Ref.: #17845]	Geographic location (country and/or sea, region)	California, Fresno County
[Ref.: #17845]	Country	USA
[Ref.: #17845]	Country ISO 3 Code	USA
[Ref.: #17845]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ422810 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	8
Soil Samples	3
Animal Samples	9
Plant Samples	13
Total Samples	33

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17845]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17845]	Pseudomonas seleniipraecipitans strain CA5 16S ribosomal RNA gene, partial sequence	FJ422810	1321	ENA	640205 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas seleniipraecipitans LMG 25475	GCA_900102335	scaffold	GenBank	640205 tax ID	*
[Ref.: #66792]	Pseudomonas seleniipraecipitans strain LMG 25475	640205.3	wgs	PATRIC	640205 tax ID	*
[Ref.: #66792]	Pseudomonas seleniipraecipitans LMG 25475	2671180043	draft	JGI IMG/M	640205 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas seleniipraecipitans LMG 25475 NCBI: GCA_900102335.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas seleniipraecipitans LMG 25475 NCBI: GCA_900102335.1
[Ref.: #69480]	motile	yes	91.503	no
[Ref.: #69480]	flagellated	yes	80.653	no
[Ref.: #69480]	gram-positive	no	98.751	no
[Ref.: #69480]	anaerobic	no	97.468	no
[Ref.: #69480]	aerobic	yes	91.117	no
[Ref.: #69480]	halophile	no	80.441	no
[Ref.: #69480]	spore-forming	no	94.948	no
[Ref.: #69480]	glucose-ferment	no	91.027	no
[Ref.: #69480]	thermophile	no	99.4	no
[Ref.: #69480]	glucose-util	yes	92.382	no

Availability in culture collections External links

[Ref.: #17845]

Culture collection no.

DSM 25106, LMG 25475, NRRL B-51283

[Ref.: #82390]

SI-ID 364611

References

#17845

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25106

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82390

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364611.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas seleniipraecipitans LMG 25475

Pseudomonas seleniipraecipitans LMG 25475

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