Strain identifier

BacDive ID: 131590

Type strain: No

Species: Acidovorax sp.

Strain Designation: Leaf191

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf191 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1872122 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23386

BacDive-ID: 131590

DSM-Number: 102564

keywords: genome sequence, Bacteria, mesophilic

description: Acidovorax sp. Leaf191 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana .

NCBI tax id

  • NCBI tax id: 1872122
  • Matching level: species

strain history

  • @ref: 23386
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf191 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131590.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Acidovorax
  • species: Acidovorax sp.
  • full scientific name: Acidovorax Willems et al. 1990
  • synonyms

    @refsynonym
    20215Paenacidovorax
    20215Paracidovorax

@ref: 23386

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Acidovorax

species: Acidovorax sp.

full scientific name: Acidovorax sp.

strain designation: Leaf191

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23386
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23386
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23386
  • sample type: leaf of Arabidopsis thaliana (wild-type)
  • host species: Arabidopsis thaliana
  • geographic location: Brugg (47.4816806N 8.217547222E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.4817
  • longitude: 8.2176

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidovorax sp. Leaf191GCA_001424425scaffoldncbi1736296
66792Acidovorax sp. Leaf1911736296.3wgspatric1736296
66792Acidovorax sp. Leaf1912643221925draftimg1736296

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes72.708no
gram-positiveno98.831no
anaerobicno98.657no
aerobicyes96.024no
halophileno95.926no
spore-formingno95.362no
thermophileno98.591yes
glucose-utilyes67.5no
motileyes88.654no
glucose-fermentno89.022no

External links

@ref: 23386

culture collection no.: DSM 102564

straininfo link

  • @ref: 89996
  • straininfo: 404080

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23386Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102564Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102564)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89996Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404080.1