Strain identifier

BacDive ID: 131561

Type strain: Yes

Species: Thermorudis pharmacophila

Strain Designation: Wkt50.2

Strain history: <- M. Stott, GNS Science, Taupo, New Zealand; Wkt50.2 <- X. Morgan

NCBI tax ID(s): 1167092 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 22788

BacDive-ID: 131561

DSM-Number: 26011

keywords: 16S sequence, Bacteria, thermophilic

description: Thermorudis pharmacophila Wkt50.2 is a thermophilic bacterium that was isolated from geothermal soil.

NCBI tax id

  • NCBI tax id: 1167092
  • Matching level: species

strain history

  • @ref: 22788
  • history: <- M. Stott, GNS Science, Taupo, New Zealand; Wkt50.2 <- X. Morgan

doi: 10.13145/bacdive131561.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/thermomicrobiota
  • domain: Bacteria
  • phylum: Thermomicrobiota
  • class: Thermomicrobia
  • order: Thermomicrobiales
  • family: Thermomicrobiaceae
  • genus: Thermorudis
  • species: Thermorudis pharmacophila
  • full scientific name: Thermorudis pharmacophila Houghton et al. 2015

@ref: 22788

domain: Bacteria

phylum: Thermomicrobia

class: Thermomicrobia

order: Thermomicrobia, not assigned to order

family: Thermomicrobiaceae

genus: Thermorudis

species: Thermorudis pharmacophila

full scientific name: Thermorudis pharmacophila Houghton et al. 2015

strain designation: Wkt50.2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22788
  • name: MODIFIED CASTENHOLZ MEDIUM (DSMZ Medium 1470)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1470
  • composition: Name: MODIFIED CASTENHOLZ MEDIUM (DSMZ Medium 1470) Composition: Tryptone 5.0 g/l Peptone 5.0 g/l Sucrose 2.0 g/l NaNO3 0.689 g/l Na2HPO4 x 2 H2O 0.111 g/l KNO3 0.103 g/l MgSO4 x 7 H2O 0.1 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.06 g/l FeCl3 x 6 H2O 0.028 g/l NaCl 0.008 g/l MnSO4 x H2O 2.2e-06 g/l H3BO3 5e-07 g/l ZnSO4 x 7 H2O 5e-07 g/l CoCl2 x 6 H2O 4.6e-08 g/l Na2MoO4 x 2 H2O 2.5e-08 g/l CuSO4 x 5 H2O 1.6e-08 g/l H2SO4 Distilled water

culture temp

  • @ref: 22788
  • growth: positive
  • type: growth
  • temperature: 68
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22788
  • sample type: geothermal soil
  • geographic location: Waikite
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_7545.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_651;96_3521;97_4320;98_5531;99_7545&stattab=map
  • Last taxonomy: Thermorudis
  • 16S sequence: HE794997
  • Sequence Identity:
  • Total samples: 1187
  • soil counts: 413
  • aquatic counts: 208
  • animal counts: 541
  • plant counts: 25

Safety information

risk assessment

  • @ref: 22788
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22788
  • description: Thermomicrobiaceae bacterium WKT50.2 partial 16S rRNA gene, type strain WKT50.2T
  • accession: HE794997
  • length: 1356
  • database: ena
  • NCBI tax ID: 1167092

GC content

  • @ref: 22788
  • GC-content: 58.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22788

culture collection no.: DSM 26011, ICMP 20042

straininfo link

  • @ref: 89975
  • straininfo: 401965

literature

  • topic: Phylogeny
  • Pubmed-ID: 26374291
  • title: Thermorudis pharmacophila sp. nov., a novel member of the class Thermomicrobia isolated from geothermal soil, and emended descriptions of Thermomicrobium roseum, Thermomicrobium carboxidum, Thermorudis peleae and Sphaerobacter thermophilus.
  • authors: Houghton KM, Morgan XC, Lagutin K, MacKenzie AD, Vyssotskii M, Mitchell KA, McDonald IR, Morgan HW, Power JF, Moreau JW, Hanssen E, Stott MB
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000598
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, Chloroflexi/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs, Hot Temperature, Molecular Sequence Data, New Zealand, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Stress

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22788Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26011Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26011)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89975Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401965.1