Name: Thermorudis pharmacophila Wkt50.2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131561

Type strain:

Species: Thermorudis pharmacophila

Strain Designation: Wkt50.2

Culture col. no.: DSM 26011, ICMP 20042

Strain history: <- M. Stott, GNS Science, Taupo, New Zealand; Wkt50.2 <- X. Morgan

NCBI tax ID(s): 1167092 (species)

SI-ID 401965

DSM 26011

Special Collections

DSMZ

Section

Thermorudis pharmacophila Wkt50.2 is a bacterium that was isolated from geothermal soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermomicrobiota*
	Class	*Thermomicrobia*
	Order	*Thermomicrobiales*
	Family	*Thermomicrobiaceae*
	Genus	*Thermorudis*
	Species	**Thermorudis pharmacophila**
	Full Scientific Name (LPSN)	Thermorudis pharmacophila Houghton et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22788]

Culture medium

MODIFIED CASTENHOLZ MEDIUM (DSMZ Medium 1470)

[Ref.: #22788]

Culture medium growth

[Ref.: #22788]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22788]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22788]			growth	68 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22788]	Sample type/isolated from	geothermal soil
[Ref.: #22788]	Geographic location (country and/or sea, region)	Waikite
[Ref.: #22788]	Country	New Zealand
[Ref.: #22788]	Country ISO 3 Code	NZL
[Ref.: #22788]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE794997 (>99% sequence identity) for Thermorudis from Microbeatlas

Aquatic Samples	208
Soil Samples	413
Animal Samples	541
Plant Samples	25
Total Samples	1187

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22788]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22788]	Thermomicrobiaceae bacterium WKT50.2 partial 16S rRNA gene, type strain WKT50.2T	HE794997	1356	GenBank ENA	1167092 tax ID

[Ref.: #22788]

GC-content

58.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #22788]

Culture collection no.

DSM 26011, ICMP 20042

[Ref.: #89975]

SI-ID 401965

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermorudis pharmacophila sp. nov., a novel member of the class Thermomicrobia isolated from geothermal soil, and emended descriptions of Thermomicrobium roseum, Thermomicrobium carboxidum, Thermorudis peleae and Sphaerobacter thermophilus.	Houghton KM, Morgan XC, Lagutin K, MacKenzie AD, Vyssotskii M, Mitchell KA, McDonald IR, Morgan HW, Power JF, Moreau JW, Hanssen E, Stott MB	Int J Syst Evol Microbiol	10.1099/ijsem.0.000598	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22788

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26011

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89975

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401965.1 )

* These data were automatically processed and therefore are not curated

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