Strain identifier

BacDive ID: 131547

Type strain: Yes

Species: Actinoplanes rhizophilus

Strain Designation: NEAU-A-2

Strain history: CGMCC 4.7133 <-- H. He et al.; Northeast Agric. Univ., China; NEAU-A-2.

NCBI tax ID(s): 1416877 (species)

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General

@ref: 22774

BacDive-ID: 131547

DSM-Number: 46672

keywords: 16S sequence, Bacteria, mesophilic

description: Actinoplanes rhizophilus NEAU-A-2 is a mesophilic bacterium that was isolated from rhizosphere soil of Sansevieria trifasciata Prain.

NCBI tax id

  • NCBI tax id: 1416877
  • Matching level: species

strain history

@refhistory
22774<- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-A-2 <- H. He
67770CGMCC 4.7133 <-- H. He et al.; Northeast Agric. Univ., China; NEAU-A-2.

doi: 10.13145/bacdive131547.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Actinoplanes
  • species: Actinoplanes rhizophilus
  • full scientific name: Actinoplanes rhizophilus He et al. 2015

@ref: 22774

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Actinoplanes

species: Actinoplanes rhizophilus

full scientific name: Actinoplanes rhizophilus He et al. 2015

strain designation: NEAU-A-2

type strain: yes

Morphology

multimedia

  • @ref: 22774
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46672.jpg
  • caption: Medium 553 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22774GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
22774GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22774positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H10), MK-9(H2), MK-10(H2), MK-10(H4)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
22774rhizosphere soil of Sansevieria trifasciata PrainSansevieria trifasciataHeilongsjiang province, Harbin (45° 30' N 127° 06' E)ChinaCHNAsia45.5127.1
67770Rhizosphere soil of Sansevieria trifasciata Prain from Heilongjiang ProvinceSansevieria trifasciataChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_126020.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3725;97_4578;98_32378;99_126020&stattab=map
  • Last taxonomy: Actinoplanes rhizophilus
  • 16S sequence: KF600711
  • Sequence Identity:
  • Total samples: 191
  • soil counts: 178
  • aquatic counts: 3
  • animal counts: 5
  • plant counts: 5

Safety information

risk assessment

  • @ref: 22774
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22774
  • description: Actinoplanes rhizophilus strain NEAU-A-2 16S ribosomal RNA gene, partial sequence
  • accession: KF600711
  • length: 1512
  • database: ena
  • NCBI tax ID: 1416877

GC content

@refGC-contentmethod
2277473.3thermal denaturation, midpoint method (Tm)
6777073-73.6thermal denaturation, midpoint method (Tm)

External links

@ref: 22774

culture collection no.: DSM 46672, CGMCC 4.7133, KCTC 39768, JCM 33034

straininfo link

  • @ref: 89961
  • straininfo: 398377

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26432564Actinoplanes rhizophilus sp. nov., an actinomycete isolated from the rhizosphere of Sansevieria trifasciata Prain.He H, Xing J, Liu C, Li C, Ma Z, Li J, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0006462015Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sansevieria/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryGenetics
Metabolism29974366Actinoplanes deserti sp. nov., isolated from a desert soil sample.Habib N, Khan IU, Chu X, Xiao M, Li S, Fang BZ, Zhi XY, Li WJAntonie Van Leeuwenhoek10.1007/s10482-018-1121-x2018Base Composition, Cell Wall/*chemistry/metabolism, China, Desert Climate, Diaminopimelic Acid/metabolism, Fatty Acids/metabolism, Galactose/metabolism, Glucose/metabolism, Glycolipids/metabolism, Mannose/metabolism, Micromonosporaceae/classification/*genetics/isolation & purification, Peptidoglycan/*chemistry/metabolism, Phospholipids/metabolism, *Phylogeny, RNA, Ribosomal, 16S/*genetics, Ribose/metabolism, Soil Microbiology, Spores, Bacterial/chemistry/growth & development, Vitamin K 2/metabolism, Xylose/metabolismPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22774Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46672Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46672)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89961Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398377.1