Strain identifier
BacDive ID: 131488
Type strain: 
Species: Modestobacter lapidis
Strain history: CECT 8844 <-- M. E. Trujillo, Univ. Salamanca, Spain; MON 3.1.
NCBI tax ID(s): 1608613 (species)
version 8.1 (current version)
General
@ref: 22715
BacDive-ID: 131488
DSM-Number: 100206
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Modestobacter lapidis DSM 100206 is a mesophilic, Gram-positive bacterium that was isolated from deteriorated sandstone from the surface of a historical building.
NCBI tax id
- NCBI tax id: 1608613
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22715 | <- M. E. Trujillo, Universidad de Salamanca, Spain; MON3.1 |
| 67770 | CECT 8844 <-- M. E. Trujillo, Univ. Salamanca, Spain; MON 3.1. |
doi: 10.13145/bacdive131488.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Modestobacter
- species: Modestobacter lapidis
- full scientific name: Modestobacter lapidis Trujillo et al. 2015
@ref: 22715
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Modestobacter
species: Modestobacter lapidis
full scientific name: Modestobacter lapidis Trujillo et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 22715
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100206.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22715 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 22715 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 22715 | GEO-MEDIUM (DSMZ Medium 714) | yes | https://mediadive.dsmz.de/medium/714 | Name: GEO-MEDIUM (DSMZ Medium 714) Composition: Agar 15.0 g/l CaCO3 1.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22715 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.851
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 22715 | deteriorated sandstone from the surface of a historical building | Salamanca (40° 57' 45'' N; 5° 45' 00'' W) | Spain | ESP | Europe | 40.9625 | -5.75 |
| 67770 | Deteriorated sandstone scraped from the surface of a historic building | Salamanca | Spain | ESP | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | |
| #Environmental | #Terrestrial | #Geologic |
Safety information
risk assessment
- @ref: 22715
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22715
- description: Modestobacter sp. MON3.1 partial 16S rRNA gene, strain MON3.1
- accession: LN810544
- length: 1452
- database: ena
- NCBI tax ID: 1608613
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Modestobacter lapidis DSM 100206 | GCA_019779905 | contig | ncbi | 1608613 |
| 66792 | Modestobacter lapidis strain DSM 100206 | 1608613.6 | wgs | patric | 1608613 |
GC content
- @ref: 22715
- GC-content: 72
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 53 | no |
| motile | yes | 70.171 | no |
| gram-positive | yes | 90.847 | no |
| anaerobic | no | 98.838 | no |
| aerobic | yes | 89.479 | no |
| halophile | no | 88.769 | no |
| spore-forming | no | 73.984 | no |
| thermophile | no | 98.266 | yes |
| glucose-util | yes | 88.821 | no |
| flagellated | no | 93.314 | no |
| glucose-ferment | no | 91.03 | no |
External links
@ref: 22715
culture collection no.: DSM 100206, CECT 8844, MON 3.1, JCM 31703
straininfo link
- @ref: 89905
- straininfo: 405687
literature
- topic: Phylogeny
- Pubmed-ID: 25987397
- title: Modestobacter lapidis sp. nov. and Modestobacter muralis sp. nov., isolated from a deteriorated sandstone historic building in Salamanca, Spain.
- authors: Trujillo ME, Goodfellow M, Busarakam K, Riesco R
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0482-7
- year: 2015
- mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22715 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100206 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100206) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89905 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405687.1 |