Strain identifier
BacDive ID: 131482
Type strain: 
Species: Actinospica durhamensis
Strain history: <- P. Golinska, Department of Microbiology, Nicolaus Copernicus University, Torun; CSCA 57
NCBI tax ID(s): 1508375 (species)
version 9 (current version)
General
@ref: 22709
BacDive-ID: 131482
DSM-Number: 46820
keywords: 16S sequence, Bacteria
description: Actinospica durhamensis DSM 46820 is a bacterium that was isolated from mineral layer of a spruce forest soil.
NCBI tax id
- NCBI tax id: 1508375
- Matching level: species
strain history
- @ref: 22709
- history: <- P. Golinska, Department of Microbiology, Nicolaus Copernicus University, Torun; CSCA 57
doi: 10.13145/bacdive131482.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Catenulisporales
- family: Actinospicaceae
- genus: Actinospica
- species: Actinospica durhamensis
- full scientific name: Actinospica durhamensis Golinska et al. 2015
@ref: 22709
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinospicaceae
genus: Actinospica
species: Actinospica durhamensis
full scientific name: Actinospica durhamensis Golinska et al. 2015
type strain: yes
Morphology
multimedia
- @ref: 22709
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46820.jpg
- caption: Medium 987 pH5 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22709 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
| 22709 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
- @ref: 22709
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 22709
- sample type: mineral layer of a spruce forest soil
- geographic location: County Durham, Hamsterlay Forest
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_164672.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15873;96_110;97_117;98_130;99_164672&stattab=map
- Last taxonomy: Actinospica durhamensis
- 16S sequence: KJ445732
- Sequence Identity:
- Total samples: 847
- soil counts: 712
- aquatic counts: 15
- animal counts: 67
- plant counts: 53
Safety information
risk assessment
- @ref: 22709
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22709
- description: Actinospica durhamensis strain CSCA57 16S ribosomal RNA gene, partial sequence
- accession: KJ445732
- length: 1426
- database: nuccore
- NCBI tax ID: 1508375
GC content
- @ref: 22709
- GC-content: 68.0
- method: fluorimetric
External links
@ref: 22709
culture collection no.: DSM 46820, NCIMB 14953, CSCA 57, DSM 99970
straininfo link
- @ref: 89899
- straininfo: 402311
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26026797 | Actinospica durhamensis sp. nov., isolated from a spruce forest soil. | Golinska P, Zucchi TD, Silva L, Dahm H, Goodfellow M | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0496-1 | 2015 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Forests, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Picea, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 35871242 | Actinospica acidithermotolerans sp. nov., a novel actinomycete isolated from sediment from an Indonesian hot spring. | Kusuma AB, Putra KE, Vanggy LR, Loh J, Nouioui I, Goodfellow M | Arch Microbiol | 10.1007/s00203-022-03058-7 | 2022 | *Actinobacteria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, *Hot Springs, Indonesia, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22709 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46820 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46820) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89899 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402311.1 |