Strain identifier
BacDive ID: 131449
Type strain: 
Species: Anaerobium acetethylicum
Strain Designation: GluBS11
Strain history: <- Madan Junghare, Univ. of Konstanz, Germany
NCBI tax ID(s): 1619234 (species)
version 8.1 (current version)
General
@ref: 22676
BacDive-ID: 131449
DSM-Number: 29698
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped
description: Anaerobium acetethylicum GluBS11 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from sludge from a methanogenic biogas reactor fed with corn silage.
NCBI tax id
- NCBI tax id: 1619234
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22676 | <- M. Junghare, Dept. Biol., Univ. Konstanz, Germany; GluBS11 <- Y. Patil and M. Junghare {2014} |
| 67771 | <- Madan Junghare, Univ. of Konstanz, Germany |
doi: 10.13145/bacdive131449.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Anaerobium
- species: Anaerobium acetethylicum
- full scientific name: Anaerobium acetethylicum Patil et al. 2015
@ref: 22676
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Anaerobium
species: Anaerobium acetethylicum
full scientific name: Anaerobium acetethylicum Patil et al. 2015
strain designation: GluBS11
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | no | |
| 67771 | positive |
colony morphology
- @ref: 22676
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 22676
- name: PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298)
- growth: yes
- link: https://mediadive.dsmz.de/medium/298
- composition: Name: PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298; with strain-specific modifications) Composition: Na-gluconate 2.2 g/l Na2CO3 1.5 g/l NaCl 1.0 g/l KCl 0.5 g/l MgCl2 x 6 H2O 0.4 g/l Na2S x 9 H2O 0.36 g/l NH4Cl 0.25 g/l KH2PO4 0.2 g/l CaCl2 x 2 H2O 0.15 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22676 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 22676 | anaerobe |
| 67771 | anaerobe |
spore formation
- @ref: 67771
- spore formation: no
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22676 | sludge from a methanogenic biogas reactor fed with corn silage | Odendorf | Germany | DEU | Europe |
| 67771 | From sludge from a methanogenic biogas reactor fed with corn silage | Odendorf | Germany | DEU | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioreactor | |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_27293.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_33;96_13532;97_16475;98_20439;99_27293&stattab=map
- Last taxonomy: Anaerobium acetethylicum subclade
- 16S sequence: KP233894
- Sequence Identity:
- Total samples: 1947
- soil counts: 318
- aquatic counts: 578
- animal counts: 1009
- plant counts: 42
Safety information
risk assessment
- @ref: 22676
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22676
- description: Anaerobium acetethylicum strain GluBS11 16S ribosomal RNA gene, partial sequence
- accession: KP233894
- length: 1402
- database: ena
- NCBI tax ID: 1619234
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerobium acetethylicum strain GluBS11 | 1619234.6 | wgs | patric | 1619234 |
| 66792 | Anaerobium acetethylicum GluBS11, DSM 29698 | 2675903067 | draft | img | 1619234 |
| 67771 | Anaerobium acetethylicum GluBS11 | GCA_900096945 | scaffold | ncbi | 1619234 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 22676 | 44.1 | high performance liquid chromatography (HPLC) |
| 67771 | 44.1 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 64.713 | yes |
| gram-positive | yes | 89.109 | yes |
| anaerobic | yes | 99.107 | yes |
| aerobic | no | 97.456 | no |
| halophile | no | 89.279 | no |
| spore-forming | no | 67.698 | yes |
| thermophile | no | 94.791 | yes |
| glucose-util | yes | 90.03 | no |
| flagellated | no | 56.704 | no |
| glucose-ferment | yes | 73.292 | no |
External links
@ref: 22676
culture collection no.: DSM 29698, KCTC 15450, LMG 28619
straininfo link
- @ref: 89871
- straininfo: 402222
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26297346 | Anaerobium acetethylicum gen. nov., sp. nov., a strictly anaerobic, gluconate-fermenting bacterium isolated from a methanogenic bioreactor. | Patil Y, Junghare M, Pester M, Muller N, Schink B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000410 | 2015 | Bacteria, Anaerobic/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Germany, Gluconates/metabolism, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology | Enzymology |
| Genetics | 28250895 | High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698). | Patil Y, Muller N, Schink B, Whitman WB, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Junghare M | Stand Genomic Sci | 10.1186/s40793-017-0236-4 | 2017 |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22676 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29698 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29698) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89871 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402222.1 |