Anaerobium acetethylicum (DSM 29698, KCTC 15450, LMG 28619)

Name: Anaerobium acetethylicum (DSM 29698, KCTC 15450, LMG 28619)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131449

Type strain

Strain Designation GluBS11

Culture col. no. DSM 29698 KCTC 15450 LMG 28619 GluBS11

NCBI tax ID(s) 1619234

Special Collections DSMZ KCTC

History <- M. Junghare, Dept. Biol., Univ. Konstanz, Germany; GluBS11 <- Y. Patil and M. Junghare {2014} <- Madan Junghare, Univ. of Konstanz, Germany

Links

Anaerobium acetethylicum GluBS11 is an anaerobe, rod-shaped bacterium that was isolated from sludge from a methanogenic biogas reactor fed with corn silage.

rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402222

LMG 28619,KCTC 15450,DSM 29698

@ref 20215

Last LPSN update 2026-02-09 11:31:28

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Anaerobium

Species Anaerobium acetethylicum

Full scientific name Anaerobium acetethylicum Patil et al. 2015

Morphology

Cell morphology

@ref	Cell shape	Motility	Gram stain
67771	rod-shaped
67771			positive

Colony morphology

22676

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22676	PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298)		Medium recipe at MediaDive	Name: PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298; with strain-specific modifications) Composition: Na-gluconate 2.2 g/l Na2CO3 1.5 g/l NaCl 1.0 g/l KCl 0.5 g/l MgCl2 x 6 H2O 0.4 g/l Na2S x 9 H2O 0.36 g/l NH4Cl 0.25 g/l KH2PO4 0.2 g/l CaCl2 x 2 H2O 0.15 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22676	positive	growth	30
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22676	anaerobe
67771	anaerobe
125438	anaerobe	93.26
125439	anaerobe	99.8

Spore formation

67771

Spore formationno

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cardiolipin biosynthesis	100	7 of 7
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	starch degradation	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	phenylalanine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	82.22	37 of 45
66794	glycogen metabolism	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	threonine metabolism	80	8 of 10
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	sulfopterin metabolism	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	glutamate and glutamine metabolism	75	21 of 28
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	degradation of hexoses	72.22	13 of 18
66794	heme metabolism	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	degradation of pentoses	71.43	20 of 28
66794	propanol degradation	71.43	5 of 7
66794	Entner Doudoroff pathway	70	7 of 10
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	citric acid cycle	64.29	9 of 14
66794	degradation of sugar acids	64	16 of 25
66794	d-xylose degradation	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	methylglyoxal degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	oxidative phosphorylation	58.24	53 of 91
66794	serine metabolism	55.56	5 of 9
66794	molybdenum cofactor biosynthesis	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	tryptophan metabolism	55.26	21 of 38
66794	lysine metabolism	54.76	23 of 42
66794	proline metabolism	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	polyamine pathway	52.17	12 of 23
66794	histidine metabolism	51.72	15 of 29
66794	myo-inositol biosynthesis	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	cysteine metabolism	50	9 of 18
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	sulfate reduction	46.15	6 of 13
66794	ascorbate metabolism	45.45	10 of 22
66794	nitrate assimilation	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	vitamin B12 metabolism	41.18	14 of 34
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	urea cycle	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	glycine metabolism	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	cyclohexanol degradation	25	1 of 4
66794	degradation of aromatic, nitrogen containing compounds	25	3 of 12
66794	catecholamine biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Environmental	#Terrestrial	#Mud (Sludge)
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22676	sludge from a methanogenic biogas reactor fed with corn silage	Odendorf	Germany	DEU	Europe
67771	From sludge from a methanogenic biogas reactor fed with corn silage	Odendorf	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KP233894 (>99% sequence identity) for Anaerobium acetethylicum subclade from Microbeatlas

Aquatic Samples	578
Soil Samples	318
Animal Samples	1009
Plant Samples	42
Total Samples	1947

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22676	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67771	IMG-taxon 2675903067 annotated assembly for Anaerobium acetethylicum GluBS11	scaffold	GCA_900096945	1619234.6	2675903067	1619234	55.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22676	Anaerobium acetethylicum strain GluBS11 16S ribosomal RNA gene, partial sequence	KP233894	1402		1619234

GC content

@ref	GC-content (mol%)	Method
22676	44.1	high performance liquid chromatography (HPLC)
67771	44.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerobium acetethylicum GluBS11
NCBI: GCA_900096945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	57.90	no
125439	motility	BacteriaNetⓘ	yes	71.20	no
125439	gram_stain	BacteriaNetⓘ	variable	78.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerobium acetethylicum strain GluBS11
PATRIC: 1619234.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.87	yes
125438	anaerobic	anaerobicⓘ	yes	93.26	yes
125438	spore-forming	spore-formingⓘ	no	55.48	yes
125438	aerobic	aerobicⓘ	no	97.12	no
125438	thermophilic	thermophileⓘ	no	90.03	yes
125438	flagellated	motile2+ⓘ	yes	75.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Fermentation of glycerol by Anaerobium acetethylicum and its potential use in biofuel production.	Patil Y, Junghare M, Muller N.	Microb Biotechnol	10.1111/1751-7915.12484	2017
Genetics	High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698).	Patil Y, Muller N, Schink B, Whitman WB, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Junghare M	Stand Genomic Sci	10.1186/s40793-017-0236-4	2017
Phylogeny	Anaerobium acetethylicum gen. nov., sp. nov., a strictly anaerobic, gluconate-fermenting bacterium isolated from a methanogenic bioreactor.	Patil Y, Junghare M, Pester M, Muller N, Schink B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000410	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22676	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29698
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Anaerobium acetethylicum (DSM 29698, KCTC 15450, LMG 28619)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900096945

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media