Strain identifier
BacDive ID: 131426
Type strain: 
Species: Shewanella electrodiphila
Strain history: <- J. Zhang, Univ. Newcastle, Newcastle upon Tyne, UK; MAR441
NCBI tax ID(s): 934143 (species)
version 8.1 (current version)
General
@ref: 22653
BacDive-ID: 131426
DSM-Number: 24955
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic
description: Shewanella electrodiphila DSM 24955 is a psychrophilic bacterium that was isolated from deep-sea sediment.
NCBI tax id
- NCBI tax id: 934143
- Matching level: species
strain history
- @ref: 22653
- history: <- J. Zhang, Univ. Newcastle, Newcastle upon Tyne, UK; MAR441
doi: 10.13145/bacdive131426.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella electrodiphila
- full scientific name: Shewanella electrodiphila Zhang and Burgess 2015
@ref: 22653
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella electrodiphila
full scientific name: Shewanella electrodiphila Zhang and Burgess 2015
type strain: yes
Morphology
colony morphology
- @ref: 22653
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 22653
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 22653
- growth: positive
- type: growth
- temperature: 15
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 22653
- sample type: deep-sea sediment
- geographic location: Mid-Atlantic Ridge, south-east of the Charlie-Gibb Fracture Zone (49° 05.40' N 27° 50.22' W) at a depth of of 2734 m
- country: United Kingdom
- origin.country: GBR
- continent: Europe
- latitude: 49.09
- longitude: -27.837
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_45737.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_215;97_234;98_263;99_45737&stattab=map
- Last taxonomy: Shewanella electrodiphila
- 16S sequence: FR744784
- Sequence Identity:
- Total samples: 140
- soil counts: 1
- aquatic counts: 106
- animal counts: 33
Safety information
risk assessment
- @ref: 22653
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22653
- description: Shewanella electrodiphila partial 16S rRNA gene, type strain MAR441T
- accession: FR744784
- length: 1484
- database: ena
- NCBI tax ID: 934143
Genome sequences
- @ref: 66792
- description: Shewanella electrodiphila DSM 24955
- accession: GCA_023283985
- assembly level: contig
- database: ncbi
- NCBI tax ID: 934143
GC content
- @ref: 22653
- GC-content: 42.4
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 80.234 | no |
| gram-positive | no | 98.698 | no |
| anaerobic | no | 96.803 | no |
| aerobic | yes | 65.428 | no |
| halophile | yes | 50.85 | no |
| spore-forming | no | 95.906 | no |
| motile | yes | 85.102 | no |
| glucose-ferment | no | 67.1 | no |
| thermophile | no | 99.452 | yes |
| glucose-util | yes | 90.983 | no |
External links
@ref: 22653
culture collection no.: DSM 24955, ATCC BAA 2408, MAR 441
straininfo link
- @ref: 89854
- straininfo: 407884
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25056297 | Shewanella dovemarinesis sp. nov., a psychrotolerant bacterium isolated from Mid-Atlantic Ridge deep-sea sediments. | Zhang J, Burgess JG | Int J Syst Evol Microbiol | 10.1099/ijs.0.057125-0 | 2014 | ||
| Phylogeny | 25999594 | Shewanella electrodiphila sp. nov., a psychrotolerant bacterium isolated from Mid-Atlantic Ridge deep-sea sediments. | Zhang J, Burgess JG | Int J Syst Evol Microbiol | 10.1099/ijs.0.000345 | 2015 | Atlantic Ocean, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Shewanella/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 28629494 | Shewanella intestini sp. nov., isolated from the intestine of abalone, Haliotis diversicolor. | Gai Y, Huang Z, Lai Q, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001878 | 2017 | Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastropoda/*microbiology, Intestines/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Shewanella/*classification/genetics/isolation & purification, Vitamin K 2/chemistry | Transcriptome |
| Metabolism | 29176835 | Enhanced eicosapentaenoic acid production by a new deep-sea marine bacterium Shewanella electrodiphila MAR441T. | Zhang J, Burgess JG | PLoS One | 10.1371/journal.pone.0188081 | 2017 | Aquatic Organisms/drug effects/growth & development/*metabolism, Biomass, Carbon/pharmacology, Cerulenin/pharmacology, Eicosapentaenoic Acid/*biosynthesis, Mutation/genetics, Nitrogen/pharmacology, *Oceans and Seas, Phospholipids/metabolism, Shewanella/drug effects/growth & development/*metabolism, Time Factors | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22653 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24955 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24955) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89854 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407884.1 |