Shewanella electrodiphila (DSM 24955, ATCC BAA-2408, MAR 441)

Name: Shewanella electrodiphila (DSM 24955, ATCC BAA-2408, MAR 441)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131426

Type strain

Culture col. no. DSM 24955 ATCC BAA-2408 MAR 441

NCBI tax ID(s) 934143

Special Collections DSMZ

History DSMZ <- J. Zhang, Univ. Newcastle, Newcastle upon Tyne, UK; MAR441

Links

Shewanella electrodiphila DSM 24955 is a bacterium that was isolated from deep-sea sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407884

ATCC BAA-2408,DSM 24955

@ref 20215

Last LPSN update 2026-05-29 08:37:37

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella electrodiphila

Full scientific name Shewanella electrodiphila Zhang and Burgess 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98

Colony morphology

22653

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22653	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22653	positive	growth	15

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22653	deep-sea sediment	Mid-Atlantic Ridge, south-east of the Charlie-Gibb Fracture Zone (49° 05.40' N 27° 50.22' W) at a depth of of 2734 m	United Kingdom	GBR	Europe	49.09	-27.837 49.09/-27.837

Taxonmaps

69479

Global distribution of 16S sequence FR744784 (>99% sequence identity) for Shewanella electrodiphila from Microbeatlas

Aquatic Samples	106
Soil Samples	1
Animal Samples	33
Plant Samples	0
Total Samples	140

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22653	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2328398v1 assembly for Shewanella electrodiphila DSM 24955	contig	GCA_023283985	934143.4	8053333967	934143	67.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22653	Shewanella electrodiphila partial 16S rRNA gene, type strain MAR441T	FR744784	1484		934143
124043	Shewanella electrodiphila partial 16S rRNA gene, strain MAR441	FR744787	1482		934143

GC content

@ref	GC-content (mol%)	Method
22653	42.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella electrodiphila DSM 24955
NCBI: GCA_023283985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	82.19	no
125438	aerobic	aerobicⓘ	yes	51.94	no
125438	spore-forming	spore-formingⓘ	no	86.59	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	84.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Enhanced eicosapentaenoic acid production by a new deep-sea marine bacterium Shewanella electrodiphila MAR441T.	Zhang J, Burgess JG	PLoS One	10.1371/journal.pone.0188081	2017
Phylogeny	Shewanella intestini sp. nov., isolated from the intestine of abalone, Haliotis diversicolor.	Gai Y, Huang Z, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001878	2017
Phylogeny	Shewanella electrodiphila sp. nov., a psychrotolerant bacterium isolated from Mid-Atlantic Ridge deep-sea sediments.	Zhang J, Burgess JG	Int J Syst Evol Microbiol	10.1099/ijs.0.000345	2015
Phylogeny	Shewanella dovemarinesis sp. nov., a psychrotolerant bacterium isolated from Mid-Atlantic Ridge deep-sea sediments.	Zhang J, Burgess JG	Int J Syst Evol Microbiol	10.1099/ijs.0.057125-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22653	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24955
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella electrodiphila (DSM 24955, ATCC BAA-2408, MAR 441)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023283985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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