Name: Shewanella electrodiphila DSM 24955
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131426

Type strain:

Species: Shewanella electrodiphila

Culture col. no.: DSM 24955, ATCC BAA-2408, MAR 441

Strain history: <- J. Zhang, Univ. Newcastle, Newcastle upon Tyne, UK; MAR441

NCBI tax ID(s): 934143 (species)

SI-ID 407884

DSM 24955

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Shewanella electrodiphila DSM 24955 is a psychrophilic bacterium that was isolated from deep-sea sediment.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella electrodiphila**
	Full Scientific Name (LPSN)	Shewanella electrodiphila Zhang and Burgess 2015

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %98

[Ref.: #22653]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22653]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22653]

Culture medium growth

[Ref.: #22653]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22653]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22653]			growth	15 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22653]	Sample type/isolated from	deep-sea sediment
[Ref.: #22653]	Geographic location (country and/or sea, region)	Mid-Atlantic Ridge, south-east of the Charlie-Gibb Fracture Zone (49° 05.40' N 27° 50.22' W) at a depth of of 2734 m
[Ref.: #22653]	Country	United Kingdom
[Ref.: #22653]	Country ISO 3 Code	GBR
[Ref.: #22653]	Continent	Europe
[Ref.: #22653]	Geographic location	49.0900°/-27.8370°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR744784 (>99% sequence identity) for Shewanella electrodiphila from Microbeatlas

Aquatic Samples	106
Soil Samples	1
Animal Samples	33
Plant Samples
Total Samples	140

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22653]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22653]	Shewanella electrodiphila partial 16S rRNA gene, type strain MAR441T	FR744784	1484	GenBank ENA	934143 tax ID
[Ref.: #124043]	Shewanella electrodiphila partial 16S rRNA gene, strain MAR441	FR744787	1482	GenBank ENA	934143 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella electrodiphila DSM 24955	GCA_023283985	contig	GenBank ENA	934143 tax ID	*

[Ref.: #22653]

GC-content

42.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella electrodiphila DSM 24955 NCBI: GCA_023283985.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	82.191	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	51.939	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	86.586	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	84.034	no

Availability in culture collections External links

[Ref.: #22653]

Culture collection no.

DSM 24955, ATCC BAA-2408, MAR 441

[Ref.: #89854]

SI-ID 407884

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella intestini sp. nov., isolated from the intestine of abalone, Haliotis diversicolor.	Gai Y, Huang Z, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001878	2017	*
Metabolism	Enhanced eicosapentaenoic acid production by a new deep-sea marine bacterium Shewanella electrodiphila MAR441T.	Zhang J, Burgess JG	PLoS One	10.1371/journal.pone.0188081	2017	*
Phylogeny	Shewanella electrodiphila sp. nov., a psychrotolerant bacterium isolated from Mid-Atlantic Ridge deep-sea sediments.	Zhang J, Burgess JG	Int J Syst Evol Microbiol	10.1099/ijs.0.000345	2015	*
Phylogeny	Shewanella dovemarinesis sp. nov., a psychrotolerant bacterium isolated from Mid-Atlantic Ridge deep-sea sediments.	Zhang J, Burgess JG	Int J Syst Evol Microbiol	10.1099/ijs.0.057125-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22653

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24955

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89854

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407884.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Shewanella electrodiphila in external resources:
SILVA
BRENDA
PANGAEA
GBIF