Strain identifier

BacDive ID: 131356

Type strain: Yes

Species: Lederbergia wuyishanensis

Strain Designation: FJAT-17212

Strain history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-17212

NCBI tax ID(s): 1347903 (species)

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General

@ref: 22583

BacDive-ID: 131356

DSM-Number: 27848

keywords: genome sequence, 16S sequence, Bacteria

description: Lederbergia wuyishanensis FJAT-17212 is a bacterium that was isolated from rhizosphere soil of the medical plant Prunella vulgaris .

NCBI tax id

  • NCBI tax id: 1347903
  • Matching level: species

strain history

  • @ref: 22583
  • history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-17212

doi: 10.13145/bacdive131356.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Lederbergia
  • species: Lederbergia wuyishanensis
  • full scientific name: Lederbergia wuyishanensis (Liu et al. 2015) Gupta et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus wuyishanensis

@ref: 22583

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Lederbergia

species: Lederbergia wuyishanensis

full scientific name: Lederbergia wuyishanensis (Liu et al. 2015) Gupta et al. 2020

strain designation: FJAT-17212

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22583
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 22583
  • growth: positive
  • type: growth
  • temperature: 30

Isolation, sampling and environmental information

isolation

  • @ref: 22583
  • sample type: rhizosphere soil of the medical plant Prunella vulgaris (common selfheal)
  • host species: Prunella vulgaris
  • geographic location: Wuyishan mountain, Fujian Province (27° 44' 4.27'' N, 117° 38' 8.11'' E, at an altitude of 1147 m)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 27.7345
  • longitude: 117.636

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_37143.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17672;97_21770;98_27331;99_37143&stattab=map
  • Last taxonomy: Lederbergia wuyishanensis
  • 16S sequence: KF040589
  • Sequence Identity:
  • Total samples: 347
  • soil counts: 233
  • aquatic counts: 56
  • animal counts: 42
  • plant counts: 16

Safety information

risk assessment

  • @ref: 22583
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22583
  • description: Lederbergia wuyishanensis strain FJAT-17212 16S ribosomal RNA gene, partial sequence
  • accession: KF040589
  • length: 1440
  • database: nuccore
  • NCBI tax ID: 1347903

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus wuyishanensis DSM 278482926597067draftimg1347903
66792Lederbergia wuyishanensis CGMCC 1.12709GCA_022900255contigncbi1347903

GC content

  • @ref: 22583
  • GC-content: 39.8
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 22583

culture collection no.: DSM 27848, CGMCC 1.12709

straininfo link

  • @ref: 89796
  • straininfo: 405323

literature

  • topic: Phylogeny
  • Pubmed-ID: 25825245
  • title: Bacillus wuyishanensis sp. nov., isolated from rhizosphere soil of a medical plant, Prunella vulgaris.
  • authors: Liu B, Liu GH, Sengonca C, Schumann P, Che JM, Zhu YJ, Wang JP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000215
  • year: 2015
  • mesh: Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Prunella/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22583Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27848Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27848)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89796Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405323.1