Strain identifier

BacDive ID: 131355

Type strain: Yes

Species: Nocardioides marmoraquaticus

Strain Designation: B374

Strain history: DSM 28169 <-- F. Fantinatti-Garboggini; CPQBA/UNICAMP, Brazil; B374.

NCBI tax ID(s): 1087253 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 22582

BacDive-ID: 131355

DSM-Number: 28169

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardioides marmoraquaticus B374 is a mesophilic bacterium that was isolated from marine sponge Glodia corticostylifera.

NCBI tax id

  • NCBI tax id: 1087253
  • Matching level: species

strain history

@refhistory
22582<- F. Fantinatti, CPQBA/Unicamp, Div. de Recursos Microbianos, Campinas, Brazil; B374 <- C. B. Afonso de Menezes
67770DSM 28169 <-- F. Fantinatti-Garboggini; CPQBA/UNICAMP, Brazil; B374.

doi: 10.13145/bacdive131355.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Nocardioides
  • species: Nocardioides marmoraquaticus
  • full scientific name: Nocardioides marmoraquaticus Wang et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Marmoricola aquaticus

@ref: 22582

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Marmoricola

species: Marmoricola aquaticus

full scientific name: Marmoricola aquaticus de Menezes et al. 2015

strain designation: B374

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22582R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
22582BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
22582GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)yeshttps://mediadive.dsmz.de/medium/1484Name: Glycerol-Yeast extract-Peptone Medium (DSMZ Medium 1484) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Bacto peptone 3.0 g/l Betaine 1.25 g/l Sodium pyruvate 1.25 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperaturerange
22582positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
22582marine sponge Glodia corticostyliferaGlodia corticostyliferaSao PauloBrazilBRAMiddle and South America
67770Marine sponge, Glodia corticostyliferaGlodia corticostyliferaSão PauloBrazilBRAMiddle and South America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Porifera (Sponges)

taxonmaps

  • @ref: 69479
  • File name: preview.99_31921.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_723;97_846;98_986;99_31921&stattab=map
  • Last taxonomy: Marmoricola
  • 16S sequence: JN615437
  • Sequence Identity:
  • Total samples: 1027
  • soil counts: 279
  • aquatic counts: 109
  • animal counts: 599
  • plant counts: 40

Safety information

risk assessment

  • @ref: 22582
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22582
  • description: Marmoricola aquaticus strain B374 16S ribosomal RNA gene, partial sequence
  • accession: JN615437
  • length: 1428
  • database: ena
  • NCBI tax ID: 1087253

GC content

@refGC-contentmethod
2258274.3fluorimetric
6777074.3thermal denaturation, midpoint method (Tm)

External links

@ref: 22582

culture collection no.: DSM 28169, CBMAI 1089, JCM 31977

straininfo link

  • @ref: 89795
  • straininfo: 401035

literature

  • topic: Phylogeny
  • Pubmed-ID: 26231541
  • title: Marmoricola aquaticus sp. nov., an actinomycete isolated from a marine sponge.
  • authors: de Menezes CBA, Tonin MF, Silva LJ, de Souza WR, Parma M, de Melo IS, Zucchi TD, Destefano SAL, Fantinatti-Garboggini F
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000254
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Base Composition, Brazil, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22582Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28169Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28169)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89795Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401035.1