Name: Nocardioides marmoraquaticus B374
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131355

Type strain:

Species: Nocardioides marmoraquaticus

Strain Designation: B374

Culture col. no.: DSM 28169, CBMAI 1089, JCM 31977

Strain history: DSM 28169 <-- F. Fantinatti-Garboggini; CPQBA/UNICAMP, Brazil; B374.

NCBI tax ID(s): 1087253 (species)

SI-ID 401035

DSM 28169

Special Collections

DSMZ
JCM

Section

Nocardioides marmoraquaticus B374 is a bacterium that was isolated from marine sponge Glodia corticostylifera.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides marmoraquaticus**
	Full Scientific Name (LPSN)	Nocardioides marmoraquaticus Wang et al. 2023

Synonym

Marmoricola aquaticus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22582]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22582]

Culture medium growth

[Ref.: #22582]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22582]

Culture medium composition

expand / minimize

[Ref.: #22582]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22582]

Culture medium growth

[Ref.: #22582]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22582]

Culture medium composition

expand / minimize

[Ref.: #22582]

Culture medium

GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)

[Ref.: #22582]

Culture medium growth

[Ref.: #22582]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22582]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22582]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22582]	Sample type/isolated from	marine sponge Glodia corticostylifera
[Ref.: #22582]	Host species	Glodia corticostylifera
[Ref.: #22582]	Geographic location (country and/or sea, region)	Sao Paulo
[Ref.: #22582]	Country	Brazil
[Ref.: #22582]	Country ISO 3 Code	BRA
[Ref.: #22582]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Marine sponge, Glodia corticostylifera
[Ref.: #67770]	Host species	Glodia corticostylifera
[Ref.: #67770]	Geographic location (country and/or sea, region)	São Paulo
[Ref.: #67770]	Country	Brazil
[Ref.: #67770]	Country ISO 3 Code	BRA
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN615437 (>99% sequence identity) for Marmoricola from Microbeatlas

Aquatic Samples	109
Soil Samples	279
Animal Samples	599
Plant Samples	40
Total Samples	1027

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22582]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22582]	Nocardioides marmoraquaticus strain B374 16S ribosomal RNA gene, partial sequence	JN615437	1428	GenBank ENA	1087253 tax ID

[Ref.: #22582]	GC-content	74.3 mol%	fluorimetric
[Ref.: #67770]	GC-content	74.3 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #22582]

Culture collection no.

DSM 28169, CBMAI 1089, JCM 31977

[Ref.: #89795]

SI-ID 401035

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marmoricola aquaticus sp. nov., an actinomycete isolated from a marine sponge.	de Menezes CBA, Tonin MF, Silva LJ, de Souza WR, Parma M, de Melo IS, Zucchi TD, Destefano SAL, Fantinatti-Garboggini F	Int J Syst Evol Microbiol	10.1099/ijs.0.000254	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22582

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28169

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89795

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401035.1 )

* These data were automatically processed and therefore are not curated

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