Strain identifier
BacDive ID: 131338
Type strain: 
Species: Sulfitobacter undariae
Strain Designation: W-BA2
Strain history: <- KCTC <- J.-H. Yoon, Sungkyunkwan University, Suwon, Republic of Korea; W-BA2
NCBI tax ID(s): 1563671 (species)
version 8.1 (current version)
General
@ref: 22565
BacDive-ID: 131338
DSM-Number: 102234
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Sulfitobacter undariae W-BA2 is a mesophilic, Gram-negative bacterium that was isolated from Leachate from a brown algae reservoir.
NCBI tax id
- NCBI tax id: 1563671
- Matching level: species
strain history
- @ref: 22565
- history: <- KCTC <- J.-H. Yoon, Sungkyunkwan University, Suwon, Republic of Korea; W-BA2
doi: 10.13145/bacdive131338.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Sulfitobacter
- species: Sulfitobacter undariae
- full scientific name: Sulfitobacter undariae Park et al. 2015
@ref: 22565
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Sulfitobacter
species: Sulfitobacter undariae
full scientific name: Sulfitobacter undariae Park et al. 2015
strain designation: W-BA2
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.995
colony morphology
- @ref: 22565
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 22565
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 22565
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 22565 | catalase | + | 1.11.1.6 |
| 22565 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22565 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 22565
- sample type: Leachate from a brown algae reservoir
- geographic location: Wando, South Sea
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Wastewater |
| #Host | #Algae | #Brown Algae |
taxonmaps
- @ref: 69479
- File name: preview.99_177801.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_252;97_275;98_40854;99_177801&stattab=map
- Last taxonomy: Sulfitobacter undariae
- 16S sequence: KM275624
- Sequence Identity:
- Total samples: 100
- soil counts: 2
- aquatic counts: 91
- animal counts: 7
Safety information
risk assessment
- @ref: 22565
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22565
- description: Sulfitobacter undariae strain W-BA2 16S ribosomal RNA gene, partial sequence
- accession: KM275624
- length: 1385
- database: ena
- NCBI tax ID: 1563671
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sulfitobacter undariae DSM 102234 | GCA_014196805 | scaffold | ncbi | 1563671 |
| 66792 | Sulfitobacter undariae strain DSM 102234 | 1563671.3 | wgs | patric | 1563671 |
| 66792 | Sulfitobacter undariae DSM 102234 | 2829985093 | draft | img | 1563671 |
GC content
- @ref: 22565
- GC-content: 55.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 86.458 | no |
| gram-positive | no | 97.687 | no |
| anaerobic | no | 98.625 | no |
| aerobic | yes | 93.256 | no |
| halophile | yes | 78.476 | no |
| spore-forming | no | 96.742 | no |
| glucose-util | no | 62.213 | yes |
| thermophile | no | 98.673 | yes |
| motile | no | 57.255 | no |
| glucose-ferment | no | 91.667 | yes |
External links
@ref: 22565
culture collection no.: DSM 102234, KCTC 42200, NBRC 110523
straininfo link
- @ref: 89779
- straininfo: 403880
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25724746 | Sulfitobacter undariae sp. nov., isolated from a brown algae reservoir. | Park S, Jung YT, Won SM, Park JM, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.000156 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phaeophyta/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 36334148 | Sulfitobacter albidus sp. nov., isolated from marine sediment of Jeju Island. | Kim M, Cha IT, Lee KE, Park SJ | Arch Microbiol | 10.1007/s00203-022-03305-x | 2022 | RNA, Ribosomal, 16S/genetics, Phylogeny, *Seawater/microbiology, DNA, Bacterial/genetics, Bacterial Typing Techniques, Nucleic Acid Hybridization, *Geologic Sediments, Sequence Analysis, DNA, Fatty Acids/chemistry, Phospholipids/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22565 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102234 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102234) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89779 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403880.1 |