Sulfitobacter undariae (DSM 102234, KCTC 42200, NBRC 110523)

Name: Sulfitobacter undariae (DSM 102234, KCTC 42200, NBRC 110523)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131338

Type strain

Strain Designation W-BA2

Culture col. no. DSM 102234 KCTC 42200 NBRC 110523 W-BA2

NCBI tax ID(s) 1563671

Special Collections DSMZ KCTC

Links

Sulfitobacter undariae W-BA2 is a mesophilic prokaryote that was isolated from Leachate from a brown algae reservoir.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403880

KCTC 42200,NBRC 110523,DSM 102234

@ref 20215

Last LPSN update 2025-12-16 10:01:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Sulfitobacter

Species Sulfitobacter undariae

Full scientific name Sulfitobacter undariae Park et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	90.5
125438	negative	97.5

Colony morphology

22565

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22565	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22565	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.4

Spore formation

@ref	Spore formation	Confidence
125439		94.6
125438		92.612

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
22565	catalase	+	1.11.1.6
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
22565	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
22565	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater
#Host	#Algae	#Brown Algae

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22565	Leachate from a brown algae reservoir	Wando, South Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KM275624 (>99% sequence identity) for Sulfitobacter undariae from Microbeatlas

Aquatic Samples	91
Soil Samples	2
Animal Samples	7
Plant Samples
Total Samples	100

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22565	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419680v1 assembly for Sulfitobacter undariae DSM 102234	scaffold	GCA_014196805	1563671.3	2829985093	1563671	64.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22565	Sulfitobacter undariae strain W-BA2 16S ribosomal RNA gene, partial sequence	KM275624	1385		1563671

GC content

22565

GC-content (mol%)55.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sulfitobacter undariae DSM 102234
NCBI: GCA_014196805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.60	no
125439	motility	BacteriaNetⓘ	no	51.30	no
125439	gram_stain	BacteriaNetⓘ	negative	90.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sulfitobacter undariae DSM 102234
NCBI: GCA_014196805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	94.36	no
125438	aerobic	aerobicⓘ	yes	85.20	no
125438	spore-forming	spore-formingⓘ	no	92.61	no
125438	thermophilic	thermophileⓘ	no	96.70	yes
125438	flagellated	motile2+ⓘ	no	60.11	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters.	Jegousse C, Vannier P, Groben R, Glockner FO, Marteinsson V.	PeerJ	10.7717/peerj.11112	2021
Phylogeny	Sulfitobacter undariae sp. nov., isolated from a brown algae reservoir.	Park S, Jung YT, Won SM, Park JM, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.000156	2015
Phylogeny	Sulfitobacter albidus sp. nov., isolated from marine sediment of Jeju Island.	Kim M, Cha IT, Lee KE, Park SJ	Arch Microbiol	10.1007/s00203-022-03305-x	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22565	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102234
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sulfitobacter undariae (DSM 102234, KCTC 42200, NBRC 110523)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014196805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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