Strain identifier
BacDive ID: 131148
Type strain: 
Species: Flammeovirga arenaria
Strain history: IAM 15329 <-- NBRC 15982 <-- IFO 15982 <-- NCIMB 1413 <-- R. A. Lewin HJ1.
NCBI tax ID(s): 1025 (species)
version 8.1 (current version)
General
@ref: 22440
BacDive-ID: 131148
DSM-Number: 28230
keywords: 16S sequence, Bacteria, mesophilic
description: Flammeovirga arenaria DSM 28230 is a mesophilic bacterium of the family Flammeovirgaceae.
NCBI tax id
- NCBI tax id: 1025
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22440 | <- CIP |
| 67770 | IAM 15329 <-- NBRC 15982 <-- IFO 15982 <-- NCIMB 1413 <-- R. A. Lewin HJ1. |
doi: 10.13145/bacdive131148.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Flammeovirgaceae
- genus: Flammeovirga
- species: Flammeovirga arenaria
- full scientific name: Flammeovirga arenaria (ex Lewin 1969) Takahashi et al. 2006
@ref: 22440
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Flammeovirgaceae
genus: Flammeovirga
species: Flammeovirga arenaria
full scientific name: Flammeovirga arenaria (ex Lewin 1969) Takahashi et al. 2006
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22440
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22440 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type |
|---|---|---|---|---|---|
| 22440 | Norse Beach Puerto Penasco Sonora | Mexico | MEX | North America | |
| 67770 | Brown sand |
taxonmaps
- @ref: 69479
- File name: preview.99_184690.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16066;96_3408;97_4183;98_120201;99_184690&stattab=map
- Last taxonomy: Flammeovirga arenaria subclade
- 16S sequence: AB078078
- Sequence Identity:
- Total samples: 204
- soil counts: 5
- aquatic counts: 188
- animal counts: 11
Safety information
risk assessment
- @ref: 22440
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22440
- description: Microscilla arenaria gene for 16S rRNA, strain:IFO 15982
- accession: AB078078
- length: 1480
- database: ena
- NCBI tax ID: 1025
External links
@ref: 22440
culture collection no.: DSM 28230, CIP 109101, IFO (now NBRC) 15982, JCM 21777, NBRC 15982, ATCC 23161, IAM 15329, IFO 15982, LMG 13024, NCIMB 1413
straininfo link
- @ref: 89601
- straininfo: 10155
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16957105 | Emendation of the genus Flammeovirga and Flammeovirga aprica with the proposal of Flammeovirga arenaria nom. rev., comb. nov. and Flammeovirga yaeyamensis sp. nov. | Takahashi M, Suzuki KI, Nakagawa Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.64324-0 | 2006 | Bacterial Typing Techniques, Bacteroidetes/classification/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis, Sphingobacterium/*classification/genetics, *Terminology as Topic | Genetics |
| Phylogeny | 21669915 | Flammeovirga pacifica sp. nov., isolated from deep-sea sediment. | Xu H, Fu Y, Yang N, Ding Z, Lai Q, Zeng R | Int J Syst Evol Microbiol | 10.1099/ijs.0.030676-0 | 2011 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, Cadaverine/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Water Microbiology | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22440 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28230 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28230) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89601 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID10155.1 |