Strain identifier
BacDive ID: 131086
Type strain:
Species: Vibrio cholerae
Strain Designation: VL 3029
Strain history: CIP <- 2016, CCUG <- NCTC <- A.L. Furniss, PHL Maidstone, Kent, England
NCBI tax ID(s): 666 (species)
General
@ref: 22378
BacDive-ID: 131086
DSM-Number: 101014
keywords: Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Vibrio cholerae VL 3029 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 666
- Matching level: species
strain history
@ref | history |
---|---|
22378 | <- NCTC <- A. L. Furniss, PHL Maidstone, Kent, England |
118252 | CIP <- 2016, CCUG <- NCTC <- A.L. Furniss, PHL Maidstone, Kent, England |
doi: 10.13145/bacdive131086.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio cholerae
- full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio albensis
@ref: 22378
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio cholerae
full scientific name: Vibrio cholerae Pacini 1854
strain designation: VL 3029
type strain: no
Morphology
cell morphology
- @ref: 118252
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22378 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
22378 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
118252 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22378 | positive | growth | 28 | mesophilic |
63431 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63431
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | + | fermentation |
68369 | 27897 | tryptophan | + | energy source |
68369 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | - | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | + | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | - | hydrolysis |
68374 | 18257 | ornithine | + | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | + | energy source |
68374 | 17634 | D-glucose | - | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | - | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | yes |
68369 | 35581 | indole | yes |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test |
---|---|---|---|
68374 | 35581 | indole | + |
68369 | 35581 | indole | + |
68368 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | + | 3.4.11.21 |
68374 | alpha-maltosidase | + | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | + | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 63431 C14:0 6.5 14 63431 C15:0 0.5 15 63431 C16:0 18 16 63431 C18:0 0.6 18 63431 11 methyl 18:1 ω7c 0.5 18.081 63431 C12:0 3OH 4.6 13.455 63431 C13:0 ISO 2OH 0.4 13.814 63431 C14:0 3OH/C16:1 ISO I 3.3 15.485 63431 C15:0 ISO 3OH 2.7 16.135 63431 C16:1 ω7c 35.9 15.819 63431 C16:1 ω7c/C15:0 ISO 2OH 3 15.85 63431 C16:1 ω9c 0.9 15.774 63431 C17:1 ω8c 0.8 16.792 63431 C18:1 ω7c /12t/9t 14.5 17.824 63431 C18:1 ω9c 0.7 17.769 63431 C18:2 ω6,9c/C18:0 ANTE 1.5 17.724 63431 Unidentified 2.6 16.303 63431 Unidentified 2.2 18.15 63431 unknown 12.486 0.5 12.486 63431 unknown 15.273 0.4 15.273 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22378 | + | - | + | + | + | - | - | - | + | + | + | +/- | +/- | - | - | - | + | - | - | - | + |
63431 | + | - | + | + | + | - | - | - | + | - | + | + | + | - | - | - | + | - | - | - | + |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22378 | + | + | + | - | - | - | + | + | + | - | + | + | + | + | + | - | - | + | + | - | + |
22378 | + | + | + | - | - | - | + | + | + | - | + | + | + | + | + | - | - | + | + | - | + |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
63431 | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | geographic location |
---|---|---|---|---|---|---|
22378 | human faeces | United Kingdom | GBR | Europe | ||
63431 | Human feces | United Kingdom | GBR | Europe | 1980-01-01 | Maidstone,Kent |
118252 | Human, Faeces | United Kingdom | GBR | Europe | 1980 | England |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
22378 | 2 | Risk group (German classification) |
118252 | 2 | Risk group (French classification) |
External links
@ref: 22378
culture collection no.: DSM 101014, NCTC 11348, WDCM 00136, CCUG 67718, CIP 111241
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22378 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101014 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101014) | |
63431 | Curators of the CCUG | https://www.ccug.se/strain?id=67718 | Culture Collection University of Gothenburg (CCUG) (CCUG 67718) | |
68368 | Automatically annotated from API 20E | |||
68369 | Automatically annotated from API 20NE | |||
68374 | Automatically annotated from API ID32E | |||
118252 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111241 | Collection of Institut Pasteur (CIP 111241) |