Strain identifier
BacDive ID: 130960
Type strain: 
Species: Ligilactobacillus murinus
Strain Designation: BARN-424-CC-5
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; BARN-424-CC-5
NCBI tax ID(s): 1622 (species)
version 8.1 (current version)
General
@ref: 22252
BacDive-ID: 130960
DSM-Number: 28690
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Ligilactobacillus murinus BARN-424-CC-5 is a microaerophile, mesophilic bacterium that was isolated from ARE mouse caecum.
NCBI tax id
- NCBI tax id: 1622
- Matching level: species
strain history
- @ref: 22252
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; BARN-424-CC-5
doi: 10.13145/bacdive130960.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus murinus
- full scientific name: Ligilactobacillus murinus (Hemme et al. 1982) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus murinus
@ref: 22252
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus murinus
full scientific name: Ligilactobacillus murinus (Hemme et al. 1982) Zheng et al. 2020
strain designation: BARN-424-CC-5
type strain: no
Morphology
colony morphology
- @ref: 22252
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 22252
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 22252
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 22252
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 22252
- sample type: ARE mouse caecum
- geographic location: Fresing
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_1521.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_871;97_1018;98_1201;99_1521&stattab=map
- Last taxonomy: Ligilactobacillus
- 16S sequence: KU196091
- Sequence Identity:
- Total samples: 39087
- soil counts: 571
- aquatic counts: 383
- animal counts: 37886
- plant counts: 247
Safety information
risk assessment
- @ref: 22252
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22252
- description: Lactobacillus murinus strain DSM 28690 16S ribosomal RNA gene, partial sequence
- accession: KU196091
- length: 1408
- database: ena
- NCBI tax ID: 1622
Genome sequences
- @ref: 66792
- description: Ligilactobacillus murinus DSM 28690
- accession: GCA_024622325
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1622
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.128 | no |
| gram-positive | yes | 95.736 | no |
| anaerobic | no | 93.759 | yes |
| aerobic | no | 98.092 | no |
| halophile | yes | 82.507 | no |
| spore-forming | no | 92.949 | no |
| motile | no | 96.174 | no |
| glucose-ferment | yes | 91.598 | no |
| thermophile | no | 97.535 | yes |
| glucose-util | yes | 93.083 | no |
External links
@ref: 22252
culture collection no.: DSM 28690
straininfo link
- @ref: 89437
- straininfo: 399018
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22252 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28690 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28690) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89437 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399018.1 |