Strain identifier

BacDive ID: 130896

Type strain: No

Species: Campylobacter coli

Strain Designation: BA1311, CNET019

Strain history: <- F. van der Wal, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; CNET019 <- J. A. Wagenaar, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; BA1311

NCBI tax ID(s): 195 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 22816

BacDive-ID: 130896

DSM-Number: 24128

keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Campylobacter coli BA1311 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from broiler flock outbreak.

NCBI tax id

  • NCBI tax id: 195
  • Matching level: species

strain history

  • @ref: 22816
  • history: <- F. van der Wal, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; CNET019 <- J. A. Wagenaar, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; BA1311

doi: 10.13145/bacdive130896.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter coli
  • full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Vibrio coli
    20215Campylobacter hyoilei

@ref: 22816

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter coli

full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973

strain designation: BA1311, CNET019

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.996

colony morphology

  • @ref: 22816
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 22816
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 22816
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22816
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no98
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837317634D-glucose-assimilation
6837330031succinate+assimilation
6837330089acetate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase+
68373urease-3.5.1.5

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
22816-++--+---+/---+-+-+/----+

Isolation, sampling and environmental information

isolation

  • @ref: 22816
  • sample type: broiler flock outbreak
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Livestock (Husbandry)
#Infection#Disease
#Host#Birds#Chicken

Safety information

risk assessment

  • @ref: 22816
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter coli strain FDAARGOS_1465195.3529completepatric195
66792Campylobacter coli strain FDAARGOS_1465195.3599completepatric195
66792Campylobacter coli strain FDAARGOS_1465195.3691completepatric195
66792Campylobacter coli strain FDAARGOS_1465195.3558completepatric195

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileyes90.117no
gram-positiveno98.628no
anaerobicno87.701no
aerobicno93.868yes
halophileno89.657no
spore-formingno95.933no
glucose-utilno91.343yes
flagellatedyes64.483no
thermophileno85.816yes
glucose-fermentno86.806no

External links

@ref: 22816

culture collection no.: DSM 24128

straininfo link

  • @ref: 89377
  • straininfo: 403056

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22816Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24128Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24128)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89377Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403056.1