Strain identifier
BacDive ID: 130866
Type strain: 
Species: Neobacillus jeddahensis
Strain Designation: JCE
Strain history: <- F. Bittar, URMITE, Univ. Méditerranée, Marseille, France; JCE
NCBI tax ID(s): 1461580 (species)
version 8.1 (current version)
General
@ref: 22175
BacDive-ID: 130866
DSM-Number: 28281
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Neobacillus jeddahensis JCE is a mesophilic bacterium that was isolated from human feces, 24-year-old obese man.
NCBI tax id
- NCBI tax id: 1461580
- Matching level: species
strain history
- @ref: 22175
- history: <- F. Bittar, URMITE, Univ. Méditerranée, Marseille, France; JCE
doi: 10.13145/bacdive130866.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Neobacillus
- species: Neobacillus jeddahensis
- full scientific name: Neobacillus jeddahensis (Bittar et al. 2017) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus jeddahensis
@ref: 22175
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Neobacillus
species: Neobacillus jeddahensis
full scientific name: Neobacillus jeddahensis (Bittar et al. 2017) Patel and Gupta 2020
strain designation: JCE
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22175
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 22175
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22175
- sample type: human feces, 24-year-old obese man
- geographic location: Jeddah
- country: Saudi Arabia
- origin.country: SAU
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_7189.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_292;97_4130;98_5283;99_7189&stattab=map
- Last taxonomy: Neobacillus jeddahensis subclade
- 16S sequence: HG931339
- Sequence Identity:
- Total samples: 1105
- soil counts: 830
- aquatic counts: 79
- animal counts: 83
- plant counts: 113
Safety information
risk assessment
- @ref: 22175
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22175
- description: Bacillus sp. JCE partial 16S rRNA gene, isolate JCE
- accession: HG931339
- length: 1517
- database: ena
- NCBI tax ID: 1461580
Genome sequences
- @ref: 66792
- description: Neobacillus jeddahensis JCE
- accession: GCA_000612625
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1461580
GC content
- @ref: 22175
- GC-content: 39.42
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.888 | no |
| flagellated | yes | 81.524 | no |
| gram-positive | yes | 82.337 | no |
| anaerobic | no | 98.503 | no |
| halophile | no | 84.822 | no |
| spore-forming | yes | 96.047 | no |
| thermophile | no | 96.502 | yes |
| glucose-util | yes | 88.274 | no |
| aerobic | yes | 54.43 | no |
| glucose-ferment | no | 88.117 | no |
External links
@ref: 22175
culture collection no.: DSM 28281, CSUR P732
straininfo link
- @ref: 89349
- straininfo: 403775
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22175 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28281 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28281) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89349 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403775.1 |